Populus nigra (Lombardy poplar): 133692440
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Entry
133692440 CDS
T10372
Name
(RefSeq) F-box protein SKP2A-like isoform X1
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133692440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pnz04121
]
133692440
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
133692440
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Gene cluster
GFIT
Motif
Pfam:
DUF7885
LRR_4
LRR_6
LRR_At5g56370
F-box-like
F-box
LRR_Zer-1
LRR_EndoS
LRR_8
F-box_4
Herpes_gI
Motif
Other DBs
NCBI-GeneID:
133692440
NCBI-ProteinID:
XP_061969374
LinkDB
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Position
4:complement(5229294..5232385)
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AA seq
384 aa
AA seq
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MAGEAKGRREDLNLYSEKPMMLAFDGGKSGIGAGGVEIEGLVITEWKDIPMELLLRIVSL
VDDRTLIMASGVCSGWRDAICSGLTHLCLSWCKNNMNNLVLSLAPKFTKLQTLVLRQDKP
QLEDNAVETIASYCHDLQDLDLSKSFKLSDLSLYALAHGFPNLTKLNISGCTAFSDVSLE
YLTQFCRKLKNLNLCGCVNGATDRALQAIGRNCSQLQSLNLGWCENVSDVGVMSLACGCP
DLRTLDLCGCVCITDDSVIALADRCPRLRSLCLYYCRNITDRAMYSLVHNRVKNKPAMWE
SMKGRYDEEGLKSLNISQCTAITPPAVQALCDSFPALHTCSGRHSLVMSGCSNLTSVHCA
CAVQAHTTPQVLFLIRHIEPHTQF
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atggcaggggaagcgaaagggaggagggaagacttgaacttgtattctgagaagccgatg
atgcttgcttttgatggtggaaagagtgggattggtgcaggaggtgtggaaatcgaaggc
ttggtgatcactgagtggaaagatatccctatggagctgttgttaaggatcgtttctctt
gttgatgataggaccttgattatggcttccggggtttgcagtggatggagggatgctatt
tgctcgggactcacccatctgtgtctctcttggtgcaaaaacaacatgaacaacttggtt
ctatctcttgctcctaaatttacaaaactgcaaactcttgtgctgcgccaagataaacca
caactcgaggataatgctgttgagactattgcaagttactgtcatgatctgcaggacctg
gatctcagcaaaagctttaagcttagtgatctctccttgtatgcattagctcacggtttt
cccaatcttaccaaactcaacatcagtggttgtacggcattcagtgatgtttctctagag
tatctgacacaattttgccgaaaattaaaaaatttgaatctctgtggatgtgtgaatggt
gcaactgaccgtgcgttgcaggctattggacgcaactgcagtcagttgcaatctttgaat
ctgggatggtgtgagaatgtgagtgatgtcggagtaatgagtctagcatgcggatgtcct
gatctcagaacccttgacttgtgtggttgtgtctgtataacagatgatagcgtgattgct
ttggcagacaggtgtccccgtcttagatccctctgtctgtactactgccggaacatcaca
gatagagcaatgtattcccttgtccacaaccgggtgaagaacaagcctgcaatgtgggaa
tcaatgaaaggcaggtatgatgaggaaggattaaagagtctcaacatcagtcagtgcacg
gcaatcacacctcctgctgttcaggctctatgtgactcgttccctgcacttcatacctgc
tcagggaggcattccctcgttatgagtggctgttcgaacctaacttccgtgcattgtgcc
tgtgctgtccaagcacacaccacaccgcaagttctattcctcatccggcacattgagccg
cacacgcagttctga
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