Populus nigra (Lombardy poplar): 133692473
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Entry
133692473 CDS
T10372
Name
(RefSeq) ATP-dependent helicase BRM-like isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133692473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133692473
03036 Chromosome and associated proteins [BR:
pnz03036
]
133692473
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133692473
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
133692473
Chromatin remodeling factors
BAF complex
133692473
PBAF complex
133692473
GBAF(ncBAF) complex
133692473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
QLQ
DEAD
Bromodomain
HDA2-3
AAA_14
Motif
Other DBs
NCBI-GeneID:
133692473
NCBI-ProteinID:
XP_061969432
LinkDB
All DBs
Position
4:12115165..12127787
Genome browser
AA seq
2236 aa
AA seq
DB search
MQSGGGGGGGPGRVGPAGRAGSTSSAAASPSSSSSSAAVWNLQLGFDSVQQQQQPRQALQ
QQLLRKPEGNEALLAYQAGALQGVTVGNNFASSPGSMQTPQQSRQFFDLARQHGSSQDGQ
NRNQGVEQQALNPMQQAYLQYAFQAAQQKSALAMQSQQQAKIGMLGPTAGKDQDIRMGNL
KMQELMSMQAANQAQASSSKNSSDHFSRSEKQVEQGQHLASDQRNEQKSPLQPTATGQLM
PANVTRPMQAPQTIQNMANNHLAMTAQLQAIQAWALERNIDLSQPANVNLMAQLIPFMQA
RMAAQLKANESNPGAQSSHLLVSKPQVASPSIASESSPRANSSSDVSGQSGTAKARQTVP
SGPFGSTSSGGMVNNPSNLAMQQQAFHSRENQAPPRQTAVLGNGMPANTGQGVDQILPSK
NALNSSETSQALQFRQLNRSSPQSAGPSTEGGSGNRFSSQGGPAVQMAQQRTGFTKQQSH
VLKAQILAFRRLKKGEGTLPQELLRAIAPPPLELQLQQQLLPAGGSNQDRPGGKIPEEQA
SHPESNDKDLQAMPSMNGQNVSKEEVFTGDEKAAVSTINMQKAPAVMKEPMPLVASGKEE
QQTATFSVKSDQESEHGLQKAPVISDLASDRGKGVAPQFPASDAVQAKKPAQVSTVPQTK
DSGSTRKYHGPLFDFPFFTRKHDSVGSTGIVNTNNNLTLAYDVKDLLFEEGVEMLTRKRL
ENLKKINGLLAVNLERKRIRPDLVLRLQIEEKKLKLLDLQARLRDEVDQQQQEIMAMPDR
LYRKFVRLCERQRMELTRQVQASQKAIREKQLKSIMQWRKKLLESHWAIRDSRTARNRGV
AKYHERMLREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSISGDASERYAVLSSFL
TQTEEYLHKLGGKITATKNQQEVEEAANAAAAAARLQGLSEEEVRAAAACTSEEVMIRNR
FMEMNAPRDSSSVNNRYYNLAHAVNERVIRQPSMLRTGTLRDYQLVGLQWMLSLYNNKLN
GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHSWLPSVSCIYY
VGGKDQRAKLFSQEVSAMKFNVLVTTYEFIMYDRTKLSKLDWKYIIIDEAQRMKDRESVL
ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQREAPVH
DGEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSTIYD
WIKSTGTIRVDPEDEKRRVQKNPAYQAKVYRTLNNRCMELRKTCNHPLLNYPYFNDLSKD
FLVKSCGKLWVLDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLE
DRESAIVDFNSPGSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRI
GQTREVKVIYMEAVVNKISSCQKEDELRSGGTVDLEDDLVGKDRYMGSIESLIRNNIQQY
KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETLHDVPSLQEVNRMIARSEDE
VELFDQMDEEFDWIEEMTRYDQVPKWLRASTKEVDATIAVLSKKPSKAILFADGMGMASG
EMETERKRGRPKGKKSPNYKEIDEETGDYSEASSDERNGYSAHEEEGEIREFEDDESSDA
VGAPPVNKDQSEDDGPACDGGYEYHQAVESTRNDHALDEAGSSGSSSDSRRMTRMISPVS
PRKFGSLSALEARPGSLSKKLPDELEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQ
PKIKRKRSIRLRPRLTVERPEEKSSNDVQRGDSFLLPFQVDNKYQAQLKSDTDMKALVEP
SGFKHDQSDSSRSRRNLPSRRIAKTSKLRASPKSSRLNLQSAPAEDAAEHSRESWDSKVP
STSGASTLGKMSDVIQRRCKNVISKFQRRIDKEGQQIVPLLADLWKRIENPGYISGAGTN
LLDLRKIEQRVDRLEYSGVMELVFDVQFMLKGAMQFYGFSHEVRTEARKVHDLFFDILKI
AFPDTDFREARDTFSFSGPSSTSISAPSPKQAALGLIKRHKSINDVEPDNGTTHKPMQRG
SIPTGEDTRRVHVPQKETRLGSGSGSSREQYPQDDSPLHPGELVICKKKRKDRDKSVVRS
RTGSSGPVSPPSMGRNITSPILSSIPKDARPNQQNTHQQGWVNQPQPTNGGAGSVGWANP
VKRLRTDAGKRRPSHL
NT seq
6711 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccggtggtggtggaggaggtgggcccggtcgggtgggaccggctgggcgtgcg
gggtccacttcatccgctgcagcatcaccttcttcttcgtcttcgtctgctgctgtatgg
aaccttcagttggggttcgattcagtacagcagcagcagcagcctaggcaggcattacag
caacaattacttagaaaacctgaaggaaatgaagcccttctagcttatcaagctggggct
cttcaaggagttacggtagggaacaattttgcttcatctccaggctcaatgcaaacgcct
caacagtccaggcaattttttgatttggctcgacaacatggttcctctcaggatggacag
aataggaatcaaggtgttgagcaacaggctttgaacccaatgcaacaggcgtatcttcaa
tatgctttccaggccgcccaacaaaagtcggccttggcaatgcagtctcagcaacaagct
aaaataggaatgctgggccctactgctggcaaggatcaggacattcggatgggaaatttg
aaaatgcaggaactcatgtccatgcaggcggctaatcaggctcaggcatcctcttctaag
aactcatctgaccatttttctcgtagtgaaaagcaggtagaacaaggtcagcacctagcc
tctgatcagaggaatgagcaaaagtctccactccagcctactgccactggacaactaatg
cctgcaaatgttacgaggcccatgcaggccccacaaaccatccaaaacatggcaaacaac
catctcgcaatgactgcacagttacaagcaattcaagcatgggcacttgagcgcaacatt
gatctgtcacaacctgcaaatgtcaacttgatggctcagcttattccattcatgcaggca
aggatggctgcacaactaaaggcaaatgaaagtaatcctggtgcgcagtcatcacatctc
cttgtgtcaaagccgcaggttgcctctccatccattgcaagtgaaagttctcctcgtgct
aattcatccagtgatgtctctgggcagtctggcactgcgaaagccaggcaaactgttcca
tctggtccctttggctcaacttccagtggaggcatggtgaataaccctagcaacctcgca
atgcagcagcaggcttttcacagcagagagaaccaagcgcctcctcgacagacagctgtg
cttggcaatggaatgcctgcaaacacaggccaaggtgtggatcagattttgccttcaaaa
aatgcattaaacagctcagaaacttcacaggcactgcaattcaggcaactgaatcgatct
tctccacaatctgctggtccttctactgaaggaggctcgggcaaccgcttctcttcacaa
ggtgggccagctgttcagatggcacaacagcgcaccgggttcactaaacagcagtcacat
gttctgaaagcacaaattctagcatttaggcgattgaagaaaggagaaggtactcttcca
caagagcttcttcgagctatagccccaccaccccttgagctgcaactgcagcagcaactt
cttcctgcaggaggaagtaatcaggacaggccaggtggaaagattcctgaagaacaagca
agtcatccggagtccaatgataaggatttacaagcaatgccatctatgaatggacagaat
gtttctaaagaggaagtttttactggcgatgagaaagcagctgtctcaaccattaatatg
caaaaggcaccggctgtgatgaaggaacccatgcccttggtggcttctgggaaggaagag
cagcaaactgctacattttctgtcaagtcagaccaggagagtgagcatggacttcagaaa
gctcctgttataagtgatcttgcatcagataggggaaagggtgttgcaccacagtttcct
gcatctgatgctgtgcaagctaagaaacctgcacaagtgagcactgtgccacagacaaaa
gattctggctccaccagaaagtatcacggaccattatttgattttcctttttttactagg
aaacatgactctgttgggtcaactgggatagttaacacgaataataacctaacattggcc
tatgatgtcaaagatcttctttttgaggaaggcgtggaaatgcttaccaggaaaaggtta
gagaatttgaagaaaatcaatggtctcttagcagtaaatttagagaggaaaaggattagg
ccagatcttgtgttgcggttacagattgaagagaaaaagttaaagcttctagatctacag
gcgcgtttaagggatgaagttgatcagcagcaacaggaaatcatggcaatgcctgacagg
ctatacaggaagtttgttcggctatgtgagcgtcaaaggatggagctgacgagacaggta
caggcctctcagaaagccataagagagaagcaattgaaatccatcatgcagtggcgcaag
aaacttcttgagtctcattgggccatccgtgattcacgcactgcccgtaacagaggagtt
gccaaataccatgagagaatgttgagggaattttcaaagagaaaggatgatgaccgaaat
aaaaggatggaggcattaaagaacaatgatgttgaaaggtacagagaaatgttgttggag
caacaaactagcatttcaggcgatgcttctgagagatatgctgttctctcatcattcttg
acccagacagaagaatatcttcataagctgggtggtaaaataacagctactaagaatcaa
caggaagtggaggaggcagctaatgccgccgctgcagctgctcgactgcagggcctatca
gaagaagaagtacgagcagctgcagcttgtactagcgaggaagtaatgataagaaaccgg
tttatggaaatgaatgcacccagggacagttcatctgttaacaacagatattacaatctt
gcccatgcagtgaatgaaagggtcataaggcaaccatctatgttacgaacaggaacctta
cgagactatcagcttgttggattgcagtggatgctttctttgtataacaacaaattaaat
ggaatcttggcagatgagatggggcttggaaagactgtgcaggtgatggcactgattgct
tatctaatggaattcaaaggaaactatggaccgcatcttataattgttcctaatgctgtt
ttggtgaattggaagagcgagctgcacagctggctgccatctgtgtcctgcatttactat
gttggtggaaaggatcagcgcgcaaaattattttcccaagaggtttctgccatgaaattt
aatgttctcgtgacaacttacgagtttatcatgtatgatcgcacaaaactttctaaactt
gattggaagtacatcataattgacgaggcacagagaatgaaggacagggaatcagtttta
gcccgtgatcttgatagatatcgctgccagaggcgcttacttctcacagggacaccatta
cagaatgacttgaaggagctatggtcactactgaatttacttctaccagaagtttttgat
aatcgtaaagcatttcatgattggttctcgaagccctttcaaagggaagctcctgtgcat
gatggagaggatgactggcttgagactgaaaagaaggttatcataattcatcgacttcat
caaattttagagccttttatgctcagacgtcgtgtggaagatgtggaaggttcacttcca
cccaaggtttccattgtcttgagatgtagaatgtctgctatacagagtacaatttatgat
tggatcaaatctactggcactatccgagttgaccctgaggatgagaagcgcagggttcaa
aaaaatccagcatatcaggctaaggtgtatagaactttaaataacagatgtatggagctc
cgaaaaacttgcaatcatcctttgcttaattacccgtattttaacgacttatccaaggat
ttccttgttaaatcttgtggaaaactttgggttctggataggatactcataaaacttcaa
agaacaggccatcgggtgctactctttagcaccatgacaaaactccttgatatattagag
gaatacttgcaatggcgccgactggtgtacagaaggatcgatggaacaactagccttgaa
gatcgtgaatcagctattgtggactttaatagccctggttcagactgctttattttcttg
cttagtattcgtgcagctggaaggggtcttaatctgcagtctgctgacacagttgtcata
tatgatcctgatccgaatcctaagaatgaggaacaggcagttgctagagcccaccggatt
ggacagacaagagaagtcaaagtcatttatatggaagcagttgttaacaaaatttctagc
tgtcaaaaggaggatgaattaagaagcggaggtacagttgatctagaagatgaccttgtt
ggcaaggatcgatatatgggttctattgagagccttataaggaacaatatccagcaatac
aagattgacatggctgatgaggttatcaatgctgggcgttttgaccaaagaacaacacac
gaggaaaggcggatgactttagagacattattgcatgacgaagagcgatatcaagaaact
ttgcatgatgttccatcactccaagaggtaaatcgcatgatagccaggagtgaagatgaa
gttgagttatttgatcaaatggatgaagaatttgattggatcgaggagatgacgaggtat
gaccaggtacccaagtggcttcgagccagtacaaaagaagtggatgctactattgctgtc
ttatcgaagaaaccatcaaaagcgatcctttttgctgatggtatgggcatggcatccggt
gaaatggaaactgaaagaaaaagggggcggccgaaagggaaaaagtctcctaattacaag
gaaattgatgaagaaactggagactattctgaggcaagttctgatgagagaaatggttat
tctgcacatgaagaagagggagaaattagggaatttgaagatgatgaatccagtgatgct
gttggggcaccacctgttaataaggaccaatcagaagatgatggtccagcatgtgatggg
ggctacgagtatcaccaagctgtggaaagcactagaaatgatcatgcactagatgaagct
ggctcctcagggtcatcctctgacagccgaagaatgacacgaatgatctctcctgtttct
cctcggaaattcgggtctctttctgctttagaagctagaccaggttcactttccaagaag
ctgccggatgaattagaagagggggaaattgcggtgtctggagattctcacatggatcac
cagcaatcgggaagttggatacatgatcgtgatgaaggtgaagatgaacaggttctacaa
cctaaaataaaacgaaaacgtagtattcggcttcgacctcgcctcactgttgaaaggcca
gaggagaagtctagcaatgatgtgcaacgtggagattcttttctgttgccattccaagtg
gataataaatatcaagcacagttgaagagtgatactgacatgaaagcattagtagagccc
agtggattcaagcatgatcagagtgattcctcaagaagtagacgaaatctaccttcaaga
agaatagccaaaacatctaagttgcgggcttcaccaaaatctagcagattgaatttgcag
tctgctccagcagaggatgctgctgaacactctagagagagctgggatagtaaagttcca
agtacaagtggtgcttcaacattgggcaagatgtctgatgtcatccagagaaggtgtaaa
aatgttattagcaagtttcaaaggagaatagacaaggaagggcaacaaattgtacctctt
ctagctgatttgtggaagaggattgaaaatcctggttacataagtggtgctggaactaat
cttttggatttacgtaagattgaacaacgtgttgacagattggagtatagtggagtaatg
gagcttgtgttcgacgtgcaattcatgttaaaaggtgcaatgcaattttatgggttctcg
catgaggttagaactgaagcaagaaaggtgcatgatctcttttttgatatcttgaagatt
gcgtttccagacacagatttccgagaggcgagggatactttctctttctctggtccatca
tcaacttcaatttcagctccatctccaaaacaagctgctcttggtctaatcaagagacac
aagtcaataaatgatgtagaacctgacaacggcactacccataagccaatgcagcgagga
tccattcctactggtgaagacacaaggagggtccatgtgccccagaaggaaacaaggctt
gggagtggaagtggcagtagtcgagaacaatatccgcaggatgattctccactgcatcca
ggggagttggttatctgcaagaagaagaggaaagaccgggacaagtcagttgtgaggtca
agaactggatcaagtggtccagtttcccccccgagcatgggccgtaatatcacgagtccc
attttgagttcaatccctaaagatgcgagaccaaaccagcagaatacccatcagcaaggg
tgggtgaatcaacctcaaccaacaaatggtggtgcggggagtgttggttgggcaaatcct
gtaaagaggttgaggacagatgctggtaaaaggcggccaagccatttatga
DBGET
integrated database retrieval system
