Populus nigra (Lombardy poplar): 133692574
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Entry
133692574 CDS
T10372
Name
(RefSeq) vacuolar protein sorting-associated protein 35B-like isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
133692574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133692574
Membrane trafficking [BR:
pnz04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
133692574
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps35
DUF5752
Motif
Other DBs
NCBI-GeneID:
133692574
NCBI-ProteinID:
XP_061969608
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Position
4:1189672..1196337
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AA seq
790 aa
AA seq
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MILAGIEDEDKWLAEGIAGIQHNAFYMHRALDSNNLRDALKCSALMLSELRTSKLSPHKY
YDLYMRAFDELRKLEIFFKDESRHGVSIVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLLDLGSKYEGAEDTVMDAVEFVL
QNFTEMNKLWVRMQHQGPVWVKEKLEKERSELRDLVGKNLHVLSQIEGVDLEIYRDTVLP
RVLEQVVNCKDELAQYYFMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDVKTVLSRLMA
RLSNYAASSADVLPEFLQVEAFAKLSSAIGKVIEAQVDMPIVGAVALYVSLLTFTLHVHP
ERLDYVDQVLGACVKKLSGKPKLEDIRAKKQFVALLSAPLEKYNDIVTALTLSNYPHVMD
CLDYETNKIMAMVIIQSAMKNNTCISTADKVEVLFELIKGLIKDLDETATDELDEEDFKE
EQNSVACLIHMLYNDDSEEMLKIICVVRKHIMAGGSQRLPFTVPPLIFSALRLVRKLQDQ
DGNVVGEEEPATPKKVFQLLNETIEALSSVSSPELALRLYLQCAEAANDCDLEPVAYEFF
TQAFILYEEEVADSKAQVTALHLIIGALQRMNVFGVENRDTLTHKATGHSAKLLKKPDQC
RAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQIANATRGCSGPVTLFVEILN
KYLYFFEKGNPQITSAAIQGLIELITNEMQSDSTTPDPASDAFFASTIRYIQFQKQKGGV
MGEKFGPIKV
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgatcttagccggaatagaagacgaagacaaatggctagcagaaggaattgccggcatt
caacacaacgccttttacatgcatcgcgctctggactcgaacaatctccgagacgctctc
aaatgctcagctctaatgctatcagagcttcgaacttctaaactctctcctcacaaatac
tacgatctctatatgagagcgtttgatgaattgaggaaactagagatatttttcaaagat
gagagtagacatggcgtttcgattgttgatttatacgaacttgtgcaacatgctggaaat
atattgcctagactgtatctactgtgtacagtaggatcggtgtatatcaaatcgaaggag
gctccggctaaggatgtgctcaaggatcttgtagagatgtgtcgcggtgttcaacatccg
attcgcggattgtttttgaggagttatcttgctcaagttagtagagataagttactggac
cttgggtctaagtatgaaggagctgaggacacagtaatggatgctgtagaatttgtgctg
caaaatttcactgagatgaacaagctttgggtccggatgcagcatcaggggcctgtttgg
gttaaagagaagctggaaaaggaaagaagcgagcttcgtgatcttgtagggaagaacctc
catgttcttagtcagatagagggtgtggaccttgagatttacagagacaccgttcttccc
agagttttagagcaggttgtcaactgtaaagatgagcttgcacagtattattttatggac
tgcataattcaagtctttccagatgagtaccacttgcagacccttgagacattgttgggg
gcctgcccccagcttcagccaacagttgatgttaagacagtgctatcacggttaatggca
agattatccaattatgctgcttcaagtgcggacgttttacccgagttcctgcaagtggag
gcatttgctaaattgagcagtgctattggaaaggtaattgaagcacaggttgacatgcct
attgttggagccgttgctttgtatgtctctctcctcacatttacactccatgttcatcct
gaacggcttgattatgtggatcaagtactgggggcatgtgttaagaagctctctggaaag
ccaaaacttgaagatatcagagcaaaaaaacaatttgttgcacttctgagtgctccatta
gaaaagtacaacgatattgtcactgccttgacactgtctaattaccctcatgtcatggac
tgccttgattatgaaacaaacaagatcatggctatggttattattcagagcgctatgaaa
aataacacttgcatttctactgctgacaaggttgaggtgttgtttgaactaataaaaggg
ctaataaaggatttggatgagactgctacagatgagctcgatgaggaggatttcaaggaa
gaacaaaattctgttgcttgcctcatacatatgctttataatgatgattcagaggaaatg
ttgaagattatctgtgttgtgaggaagcatataatggctggaggatcgcaacgattacct
tttactgtccctcctctcatattttctgcactcaggttggtgagaaagttgcaagatcag
gatggaaatgtagtgggagaagaagagcctgcaacgcctaagaaagtttttcagctcctg
aacgagacaattgaggctctttcatctgtttcctcacctgagctggcattaaggttatac
ttgcaatgtgctgaggctgccaatgactgtgatctggagccagttgcttatgagtttttt
acacaggcattcatattatatgaggaagaagttgcggactccaaggctcaggtgactgca
ttacatctaataattggggctctccagaggatgaatgtatttggtgttgagaacagggac
actctgacacacaaggccacgggacattctgcaaagcttttgaagaaacctgatcagtgc
agagcagtctacgcatgctcacatctattttgggttgatgatcaggatggcatcaaggat
ggggaaagggtcctgctttgcctcaagcgtgccttgaggattgcaaatgcagctcagcag
attgccaatgcaacaaggggttgcagtggaccggtcacactgtttgttgagatattaaac
aagtacctgtacttttttgagaaaggaaacccgcagattactagtgctgcaatacaagga
ctgatcgaattaattactaatgaaatgcaaagtgactccaccacaccagatccagcatca
gatgccttctttgccagcacaattcggtacattcagttccagaaacaaaagggtggtgtt
atgggtgagaaatttgggcctatcaaggtgtaa
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