Populus nigra (Lombardy poplar): 133692576
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Entry
133692576 CDS
T10372
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133692576
09123 Folding, sorting and degradation
03018 RNA degradation
133692576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133692576
03041 Spliceosome [BR:
pnz03041
]
133692576
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133692576
mRNA degradation factors
5'-3' decay
Lsm complex
133692576
Spliceosome [BR:
pnz03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133692576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
133692576
NCBI-ProteinID:
XP_061969612
LinkDB
All DBs
Position
4:complement(16924313..16926786)
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AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEIKSRSDRKPPGVGRGRGRGREDGPGGRPAKGIGRGLED
AAKGMGGGRGRGGPGGKIGGSRGAGRGRG
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttctttactcaagactgctcaaggccacccaatgttggtggaattgaaa
aatggagagacttacaatgggcatttggtcaattgtgatacttggatgaacatccatctc
cgtgaagttatctgtacctctaaggatggagataggttttggcggatgcctgaatgctac
attcgtgggaatactatcaagtatcttcgagttcctgatgaggtaattgataaagttcag
gaagaaatcaagagtcgctcagatcggaagccacctggagtagggcgtggaagaggaaga
ggtagagaagatggtcctggtggaaggccagcaaaagggattgggcgtggccttgaagat
gctgctaagggcatgggtggaggtcgtggcagaggtggtccaggcggaaagatcggtggg
agcagaggtgcaggccggggccgcggctaa
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