Populus nigra (Lombardy poplar): 133692606
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Entry
133692606 CDS
T10372
Name
(RefSeq) cleavage stimulating factor 64
KO
K14407
cleavage stimulation factor subunit 2
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133692606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133692606
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
133692606
U7-dependent histone pre-mRNA processing factors
133692606
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
RRM_7
partial_CstF
Motif
Other DBs
NCBI-GeneID:
133692606
NCBI-ProteinID:
XP_061969662
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Position
4:complement(4248543..4253916)
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AA seq
545 aa
AA seq
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MASSSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEE
TALSARRNLQGYEINGRQLRVDFAENDKNADRNREQGRGGPRLAANNDPQKQAGGPAILE
EPAQHQPIGLHIAITAATVMAGTLGGAQTVMQSNQNGLQSQPALASDPLTLHLAKMSRNQ
LNEIMSELKGMATQNREAAHQLLLGKPQLSKALFQAQIMLGMVTPQVLQLPNIRQSTGQP
ALSSLQDSQQVQRPAVPNLPGLPPTAQRMQLGLGQFSAGPQPSVQPQKSLVHNQFSATPQ
PSVQAQTQIPHHVNNHVPHHATLLGQSAPLPAALPSVRPPVQMANSAPLNQQMQPSLVQH
TRQVGNTNARHNPQMVLPNKAMQSSLLSRPPATGSFQSGLSVSSGLSDAANADRSTLRSN
AYLNMQTSTAHDSKEPINRPSKVLKLDDGRSMSVPMGGSNLFNATGSGPSQAPAVNSVPP
NPLPRPEELQHSGKQVPQLPADIESALLQQVLNLTPEQLSSLPPDQQQQVIQLQQALLRD
QMQPS
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcttctcagcatcgctgcgtttttgttgggaatataccgtatgatgcaacc
gaggaacagctaattgaaatctgcagagaggttgggcctgttgtgtccttcagattagta
attgatcgagaaactgggaaacctaaaggttatggattctgtgaatataaggatgaagag
acagcgctaagtgctcgtcgtaatcttcagggttatgagatcaatggccggcagttacgg
gttgattttgctgaaaatgacaaaaatgctgacagaaaccgagaacagggtcgcgggggt
cctcgactggctgcaaataatgatccccagaaacaagcagggggtccagcaattctggag
gagccggctcagcaccagccaattggtctccacatagccattactgctgcaactgtcatg
gcaggaactttaggtggtgctcagactgtcatgcagtcaaatcaaaatggtttacagagt
cagccagcactagcaagtgaccccctgactcttcatctggcaaaaatgtctagaaatcaa
ttgaatgaaatcatgtctgagctaaagggaatggctacacaaaacagggaagcagctcac
cagctgttacttggaaaaccacagctgtcaaaagctctttttcaggcacagataatgctt
ggaatggtgactccacaagtgttgcagctcccaaatattcggcaatcaacaggtcaaccc
gctctatcttcattacaagattctcaacaggttcagcggccagcagttccaaatcttcct
gggttaccccctactgcgcagaggatgcagttgggcttaggtcaattttctgctggtcca
caaccatctgttcagcctcagaagtctctggttcacaaccaattttctgcaaccccacaa
ccatctgttcaagctcaaacacagattccacatcatgtcaacaaccatgttcctcatcat
gccacattgttagggcagtctgcgccacttcctgctgcgcttccttctgttagaccacct
gttcagatggcaaactctgcacctctgaaccaacaaatgcaaccttcattggtacaacat
acaagacaggttggaaatacgaatgctaggcacaaccctcagatggttcttcccaataaa
gctatgcaatcttctcttttatcccgtcctccagcaacaggctcctttcagtctggcctc
tcagtatcatcgggcctttcagatgcagcaaatgctgataggtctactctcagaagtaat
gcatatttgaacatgcaaacaagcacagctcatgattctaaagaaccaattaatcgccct
tcaaaggtgttaaaattagatgatggaaggagcatgtctgtccctatgggaggttctaat
ttgtttaatgccactggatctggaccatcccaagcacctgcagtcaattcggttcctcca
aatccacttcccaggccagaagagttgcagcattctgggaaacaagttcctcagcttcca
gcggacatagagtctgccttactgcagcaagtgctgaacctcacaccagagcagttgagt
tcattgccacccgatcagcaacagcaagttattcagctccaacaggcacttctgcgagat
cagatgcaaccatcataa
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