Populus nigra (Lombardy poplar): 133692628
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Entry
133692628 CDS
T10372
Name
(RefSeq) CLIP-associated protein isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pnz03036
]
133692628
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pnz04812
]
133692628
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
133692628
Cytoskeleton proteins [BR:
pnz04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
133692628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
CEP104-like_TOG
HEAT_EF3_N
HEAT
XMAP215_CLASP_TOG
HEAT_EZ
HEAT_GCN1
TOR1L1_N
HEAT_2
HEAT_GCN1_C
Vac14_Fab1_bd
TPR_DNAAF5
TPR_CAND1
Cnd1
PDS5
HEAT_MROH2B_C
Adaptin_N
INTS1_R4
MMS19_C
HEAT_Maestro
UTP20
TPR_IMB1
Tti2
HEAT_DAAF5
RRP12_HEAT
VPS15-like_hel
Sec7-like_HUS
Dopey_N
IFRD
V-ATPase_H_N
Npa1
SEN1_N
DUF7217
Motif
Other DBs
NCBI-GeneID:
133692628
NCBI-ProteinID:
XP_061969691
LinkDB
All DBs
Position
4:complement(24133541..24144958)
Genome browser
AA seq
1443 aa
AA seq
DB search
MEEALELARAKDTKERMAGVERLHQLLEACRKSLSSSETTSLVDCCLDLLKDNNFKVSQG
ALQALASAAVLSGDYFKLHFNALVPAVVERLGDGKQPVRDAARRLLLTLMEVSSPTIIVE
RAGSFAWTHRSWRVREEFARTVTSAINLFASTELPLQRAILPPILQMLNDPNPGVREAAI
LCIEEMYSQAGPQFRDELHRHHLPNSMMKDINARLERIEPQVRPSDGLGGNFAPVEMKPT
SLHPKKSSPKAKSSTREISLFGAESDVTEKPIEPIKVYSEKELIREFEKIAATLVPEKDW
TIRIAAMQRVEGLVLGGATDYPCFRGLLKQFVGPLNTQLSDRRSSVVKQACHLLCFLSKD
LLGDFEACAEMFIPALFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRA
AVLRARCCEYALLILEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKT
WPERSRRLFMSFDPVIQRIVNEEDGGLHRRHASPSIRDRSAQTSFTPQASAASHVPGYGT
SAIVAMDRTSSLSSGTSLSSGLLLSQAKSLGKGTERSLESVLHASKQKVTAIESMLRGLE
LSDKQNPSALRSSSLDLGVDPPSSRDPPFPASVPASNHLTNSLTAESTASGIGKGNNRNG
GLVLSDIITQIQASKDSAKLSYRNNMSAESLPTFSSYSTKRISERGSVEEDNDIREPRRF
ANPHVDRQYMDTPYKDLNYRDSHSSHIPNFQRPLLRKHVAGRMSAGRRKSFDDSQLSLGE
VSSYVEGPASLSDALSEGLSPSSDWNARVAAFNYLHSLLQQGPKGVQEVIQNFEKVMKLF
FQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTL
EIVSKTYGVDILLPALLRSLDEQRSPKAKLAVIEFALSSFNKHAMNSEGSGNTGILKLWL
AKLTPLVHDKNTKLKEAAITCIISVYSHFDSIAVLNFILSLSVEEQNSLRRALKQYTPRI
EVDLMNFVQSKKERQRSKSSYDPSDVVGTSSEEGYVGASKKSHYFGRYSGGSVDSDGGRK
WNSTQESTLISGSIGQAAPDETQENLYQNFETSSNTDVYSSKNRDSNYVVGSTGLNLGSR
PGRLENMDNGLNFEGLLTPGMDINGLMSSEPLRAAEGYGHDNNVLSELDLNNHKPAAVKI
NSLADTGPSIPQILHLICNGNDESPTSSKRGALQQLIEASMANDPSVWSKYFNQILTAVL
EVLDDSDSSIRELTLSLIVEMLKNQKDAMEDSIEIAIEKLLHVTEDIVPKVSNEAEHCLT
VALSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMVQLPSFLPALFEA
FGNQSADVRKTVVFCLVDIYIMLGKAFLPHLEGLNSTQLRLVTIYANRISQARTGTAIDA
SHD
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggcgctggaactggcgcgcgcgaaggacacgaaggagaggatggcaggagtc
gagaggctacaccaacttcttgaagcttgtagaaagagtttgagttcgtccgaaacgacg
tcgcttgtcgattgctgcttggatcttttgaaagacaacaatttcaaggtttctcaaggt
gctttacaggcgttggcttctgctgctgttttgtctggtgactactttaagttgcatttc
aatgcgcttgttcctgctgttgttgaacgcctaggtgacggtaaacagcccgttcgtgac
gccgctcgacgcctcttgctcactcttatggaggtttcgtcgcctacaatcattgttgaa
agagctggctcgtttgcctggacgcacagaagctggagagttcgggaagagtttgctcga
acagtaacatctgcaattaatctttttgcatctactgagcttcctcttcagcgggctatt
ctacctcctattttgcagatgttgaatgacccgaatcctggtgttagggaagcagctata
ttatgcatcgaggagatgtactcacaggctgggccccaattccgtgacgagcttcatcgc
catcatcttcctaattccatgatgaaagatatcaatgccagactagagaggattgaacca
caagtacgcccttcagatggacttggcggtaactttgctcctgttgagatgaagcccaca
agccttcatcccaagaaaagcagtccaaaagccaaaagttccacgagggagatatctctt
tttggagcggagagtgatgtcacagagaaacccatagagccaattaaagtttactcagaa
aaggagctaattagggaatttgagaagattgcggctacccttgttccagaaaaggattgg
actatccgcatagctgccatgcagagagttgaaggccttgttttgggaggtgctactgat
tacccatgttttcgggggcttctgaagcaatttgttggccctctaaacacacagttatct
gatcgaaggtctagcgtagtgaagcaggcttgccatctattatgctttttatcgaaggat
ctgttgggagattttgaggcatgtgccgagatgttcattcctgcccttttcaagctcgtt
gtgattactgtacttgtaattgcagaatctgcagataactgcataaaaacgatgttgcgt
aactgtaaagttgctcgtgtgcttcctcgcatagctgattgtgcgaagaatgaccgcgct
gcagtactccgtgcaagatgttgcgaatatgcactattgatacttgaacattggcccgat
gctcctgaaatacagcgatctgctgatctctatgaagatctgataagatgttgtgttgca
gatgcaatgagcgaggtgcgctcaactgcaaggatgtgctacagaatgtttgcaaaaact
tggccagagcgttcccgtcgtttatttatgtcctttgatcctgttattcaacggattgtt
aacgaagaggatggaggcttgcacaggaggcatgcatctccttccatccgtgatagaagt
gctcaaacatcatttacccctcaggcatctgcggcttcacatgtacctggatatggaact
tctgctattgttgcaatggatagaacttcaagtttatcctctgggacatctctgtcttct
ggtcttttgctctcacaagcaaagtcccttggtaaaggtactgaacgtagtctggaaagt
gtgttgcacgctagtaagcagaaggtcactgcaattgaaagcatgcttagaggtttggaa
ttatccgacaaacaaaatccttcagctctccgttcatcaagtttggatctaggagttgac
cctccatcatctcgtgatccaccattccctgcatccgttccagcctctaatcatctcaca
aactctttgacagcagaatcaactgcttctggtattggtaaaggcaataaccgcaatggt
ggcttggtcttgtctgatattattacccaaattcaagcttccaaagattctgctaagcta
tcatatcggaataatatgtcagccgagtctttgccaacattttcatcatattcaacaaag
aggatttctgaaagaggttcagttgaagaggacaatgacattagggaacctaggcgattt
gcgaacccacatgtagacagacagtatatggacacgccttacaaagatttaaactacagg
gattcacatagcagtcacatccccaacttccagagaccacttttgagaaagcatgtggct
ggacgaatgtctgcaggcaggcgaaagagtttcgatgatagtcaactctcacttggagag
gtgtcaagttatgtagaaggtccagcatctctcagcgacgcattgagtgagggacttagt
ccaagttctgactggaatgctagggttgctgctttcaattacctccattctttgctgcag
caaggcccaaaaggtgttcaagaagtaattcagaattttgagaaggtaatgaagttgttt
ttccagcatctggatgatccgcatcataaagttgcacaagcagctctctcgacacttgca
gatattattccatcttgccgaaagccatttgagagttacatggaacggatcttaccccat
gttttctcccgattaattgaccccaaggagctagtcaggcaaccttgctccacaactttg
gaaattgtcagcaaaacttatggggttgatattcttttaccagcattgctccgttcacta
gatgagcagaggtcaccaaaagccaaattggctgttattgagtttgccctcagttcattt
aacaagcatgcaatgaactctgaaggctctgggaatactggcattttgaagttatggctt
gctaagctgacaccgttagtacatgataaaaatactaagctcaaggaagctgctattaca
tgcattatatcggtctattcacactttgattccatagctgtcctcaatttcattcttagt
ttatcggttgaagaacaaaattccttgcgacgagcccttaaacagtacactcctcgtatt
gaagtggacctaatgaactttgtgcagagcaagaaagagcgacagcgatctaagtcctct
tacgacccatctgatgttgttggaacatcatcagaagaaggatatgttggtgcatcaaag
aagagtcactattttggaaggtattctggtggttctgttgatagtgatggcggcaggaag
tggaattctacccaagaatcaaccctgatatcgggaagtattggccaagcagctcctgat
gaaactcaggagaacttgtatcagaattttgagactagttctaatactgatgtctatagt
tcaaaaaatagggattcgaattatgtggttggttctaccggtctgaacttgggatcccgg
cctggccggctggaaaacatggacaatggccttaactttgaagggctgttgaccccaggt
atggacattaatggattgatgagttctgaacctctgcgtgctgctgaaggctatgggcat
gacaataatgttctttctgagttggaccttaataatcataaacctgcagctgtgaagatt
aattctttggctgacaccggtcctagcattcctcaaattcttcatctgatatgcaatggt
aatgatgaaagccctacctcaagtaagcgtggtgcacttcagcagttaattgaagcttct
atggctaacgatccctctgtttggtccaaatacttcaatcaaattttaacggctgtactg
gaggtgttggatgattctgattcatcaatccgagaacttactctttcactgattgtggaa
atgctaaaaaatcagaaagatgccatggaagattctattgagattgctattgagaagctg
cttcatgttacagaggatattgttccaaaagtttccaatgaagccgagcactgcttgact
gttgcattgtctcagtatgatccattcagatgcttaagtgtaattgtccctttattggtt
actgaagatgagaaaactcttgtaacctgcataaactgtttaactaagcttgtgggtcgt
ctttcacaagaggagctgatggtccagttaccatcatttttgcctgcactttttgaagct
tttggaaaccagagtgctgatgttcgcaagactgtggttttctgtctggtggatatatat
atcatgcttggaaaagcatttttgccgcacctggaagggcttaacagtacacagctgcgt
ttggtgaccatttatgctaatcggatatcacaggcaagaacaggtactgcaatagatgct
agccatgattag
DBGET
integrated database retrieval system
