Populus nigra (Lombardy poplar): 133692719
Help
Entry
133692719 CDS
T10372
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133692719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133692719
03009 Ribosome biogenesis [BR:
pnz03009
]
133692719
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133692719
Spliceosome [BR:
pnz03041
]
Complex A
U1 snRNP components
U1 related factors
133692719
Complex B
133692719
Ribosome biogenesis [BR:
pnz03009
]
Eukaryotic type
Pre-60S particles
Helicases
133692719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
133692719
NCBI-ProteinID:
XP_061969828
LinkDB
All DBs
Position
1:complement(14543845..14550067)
Genome browser
AA seq
793 aa
AA seq
DB search
MAATATASSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTLPKSVSSL
PITSSVQVHQSSHRGYNPSVKEDDRYGRANNAGSKPDAVTKSISSSNQSARGAAIQSENV
PNGTANGLSARVYGSSAGGSGMSGEAYRRRHEITVTGDEVPPPLTSFETTGFPSEILKEV
LNAGFSAPTPIQAQSWPIALQSRDIVAVAKTGSGKTLGYLIPGFIHLKRSCNDPRLGPTV
LVLSPTRELATQIQVEAVKFGKSSRFSCTCLYGGAPKGPQLKELDRGADIVVATPGRLND
ILEMRRVSLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPKEVRKIA
ADLLVNPVQVNIGNVDELVANKSITQYVELLAPLEKHRRLEQILRSQESGSKIIIFCSTK
KMCDQLARNLARQFGAAAIHGDKSQSERDYVLSQFRTGRSPILVATDVAARGLDIKDIRV
VINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKHASDLMKVLEGANQQVPPEIR
DMASRGGGGMGRFRRWGSGGHDGGRGGRSDFGYGGRGSWGMSNSSSSRPERGGGRGNDHE
SRDRYDRGYGDGHDKGHNHNRSPDKGSGWGDRSKSWNHDKSHSRSPDRHDRAPPVRSFHQ
AMMEKGRASIPVQIQHERSRSPSAGGSSFHKAIMERSRASPPRQVHRERSRSPYHGSGGS
FHKEMIEQSRPSPYHAQQERGRSPSSGHDRGFNAGPRSYVGEEEEEGMIPADEDGMIPPD
DNSMFRGAEEKRH
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggctgctacagcgactgcgtcttccgtgggtccaaggtatgcaccggaggacccgact
ctcccgaaaccatggagaggtttggttgatggtaaaaccggttacctttatttttggaat
ccagagaccaatgttactcagtatgagaggcctactctgccgaagtctgtttcgtcacta
cccattacttcttctgttcaagttcaccagtcttctcatcgggggtataatccctcggtt
aaggaagatgataggtatggaagagccaacaatgctggatcaaaacctgatgctgtaacc
aagagtattagcagtagtaatcagagtgcaagaggtgcagcaattcaatctgaaaatgtc
ccaaatggaacagccaatggactctctgctcgggtatatggatcatcagctggaggaagt
ggtatgtctggagaggcttatcgccgccgccatgaaataactgtcactggtgatgaagtg
ccccctcctctaacatcatttgaaactactggctttccttccgagattttaaaagaggta
ctcaatgcagggttctctgccccaactccaattcaggcacaatcatggccgatcgcattg
caaagtagagatatagtggccgttgccaagactggttcgggtaaaacactaggttaccta
attccaggctttatccatctcaagcgcagctgtaatgaccctcgactgggtccaacagtg
ctggtactgtcaccaacaagagaactggcaacacagatacaagttgaagctgtgaagttt
ggaaagtcatcaagattttcctgcacgtgcttgtatggaggagcaccaaagggtccccag
ttaaaagaactagacagaggagcagatattgtggttgccactcctggtcgcttgaatgac
attcttgaaatgaggagagttagcctcagtcaagtttcttaccttgtactagatgaggct
gatcgcatgttggacatgggttttgaaccccagatacgaaagattgtaaaggaagtgcct
gctcgtcgccagaccctcatgtacacagcaacttggccaaaggaagttagaaaaattgca
gcagatcttcttgtcaatcctgttcaggttaacatcggcaacgtagatgagcttgtggca
aacaagtcaatcacacagtatgttgaattattggcacccttggaaaaacatagacggtta
gagcagatattgcggtcacaagaatctggatcaaagattattattttttgctcaaccaag
aagatgtgtgatcaacttgctcgcaacctagcccgccaatttggagctgctgctattcat
ggtgacaaatctcagagcgagagggattatgttctgagtcagttccgaactgggaggtct
ccaatacttgtagctactgatgtagctgctcgaggactagacattaaagatatcagagtg
gttatcaattatgacttccctactggagtggaagattatgttcataggattgggagaact
gggagggcaggggccactggagtggcctacacattctttggtgaccaggatgcaaagcat
gcttcagatctcatgaaagttctggaaggagcaaatcagcaggtccctccagagatacgt
gatatggcttcacgtggtggtggggggatgggaaggtttagacgttggggctctggcggt
catgatggggggcgcggtggacgcagtgattttggttatggtggaaggggtagttgggga
atgtccaactcctcttctagcagaccagaaagaggtggaggccgtggaaatgaccatgag
tcgcgggacaggtatgatcggggatacggtgatggacatgataaaggccacaatcacaat
cggagccctgacaagggatcaggttggggtgatcgcagtaaaagttggaaccatgataaa
agccatagtcggagcccggacaggcacgatagggctccaccagtgcgcagttttcaccag
gcaatgatggaaaagggtcgggcatccatccctgttcaaattcagcacgagaggtctcga
tcacctagtgctggtggtagcagttttcacaaggcaataatggaaaggagtcgggcatcc
ccaccacgtcaagtccaccgtgagaggtctcgatccccttatcatggtagtggtgggagt
ttccacaaggaaatgatcgaacaaagtcggccatccccttaccatgcccagcaggagcgg
gggagatcaccgagcagtggacatgatagaggatttaatgctgggcctcgttcttatgtt
ggagaagaagaggaggagggaatgattccagccgatgaagatggcatgatacctccagat
gataatagcatgtttcgaggagcagaggaaaaacgccactga
DBGET
integrated database retrieval system
