Populus nigra (Lombardy poplar): 133692729
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Entry
133692729 CDS
T10372
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03022
Basal transcription factors
pnz03420
Nucleotide excision repair
Brite
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133692729
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
133692729
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
133692729
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
133692729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133692729
NCBI-ProteinID:
XP_061969845
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Position
4:3684973..3690417
Genome browser
AA seq
758 aa
AA seq
DB search
MKFQIEDVTVYFPYDHIYPEQYSYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT
ISKPQGAIKLIYCTRTVHEMEKTLAELKLLHNYQVKHLGPAAKILAIGLSSRKNLCVNPN
VLEANNRDSVDAACRKRTASWVRALAAENPNVETCEFFENYERAASGAVLPPGVYTLQDL
RAYGKEKGWCPYFLARHMVQLANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTLDGASRNISRIEQEINRFKATDANRLRDEYKRLVNGLALSGNLPG
SDSWLSNPALPDDILREAVPGNIRRAEHFLHVLRRLLQYLTVRLDTENVEKESPISFVAS
INNQAGIDQKTLKFCYDRLHSLMLTLEITDTDEFLHVQTICDFATLVGTYSRGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGIVCFFV
SYSYMDGIINTWNESGLLKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKTGSSGKKTLLSQEDLEKMDDSGKQAMLY
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcaaatcgaggacgtgaccgtatacttcccgtacgatcacatatacccggag
caatactcctacatggtggagctaaagcgtgcactagatgctaaaggtcactgcctgctt
gaaatgcctacaggaacgggaaagacaatagctttactatcattaatcacaagctacact
atctctaaacctcaaggcgcaatcaagctaatttactgcactcgcacagttcacgagatg
gagaaaaccctagccgaattgaagttattgcataattatcaagtcaagcacctcggccct
gctgccaagattttggcgattggattgtcttcgaggaagaatttgtgtgtaaatcctaat
gttttggaagcgaataatagggattcggttgatgctgcgtgtcggaaaaggactgcgagt
tgggttagggctttggccgcggagaatccgaatgtcgagacttgtgagttttttgaaaat
tacgagagggctgcttctggtgctgttttgcctcctggggtttatactcttcaggatcta
agggcatatgggaaagagaaagggtggtgtccatattttttggcaaggcatatggtgcag
cttgcgaatgtagtggtttatagttaccaatacttgcttgatccgaaggtggctgggatt
atatccaaggaaatgcagaaggaatctgttgttgtgtttgacgaggcgcataatatcgat
aatgtatgtattgaagcacttagtgttagtgtgaggaggcaaacacttgatggagcatca
agaaatatctcaaggattgaacaagagattaacaggttcaaggccactgatgctaataga
ctgcgtgatgagtacaagcggcttgttaatggtttggcattaagtggaaacttacctggc
tcagattcctggctttcaaatcctgccttgcctgatgatattctgagggaagcagttcct
ggaaatattcgccgggcagaacattttttgcatgttttacgaagattgctccagtatcta
acagtgcggttggatactgagaatgttgagaaggaaagccctattagctttgttgcctcc
ataaacaaccaagctggaatcgaccagaaaacactaaagttttgttatgatcgcctacat
tcacttatgttgacgttggaaataactgatacagatgagttcttgcatgtccaaacaata
tgtgactttgcaacactagtggggacatattctcgtggattttccatcataattgaacct
tttgatgagagaatgccacatattcctgaccctgtattacagctcagttgccatgatgct
tctcttgccataaagcccgtgtttgaccggtttcagtcagtcgtaattacatctggaact
ctaagtccaattgatctctatcctcgacttcttaatttccaccctgttgtcagtcgaagc
tttaagatgtccttgactagagattgcatatgtccaatggttctcactcgtggaagtgat
caacttccagtgagtaccaaatttgatatgagaagtgatcccggtgttgtaaggaattat
gggaagctattggtggagatggtttctattgttccagatggaattgtgtgcttttttgtg
agttattcgtacatggatgggattatcaacacctggaatgaaagtggacttctaaaggaa
ataatgcaacataagcttgtctttattgagacccaagatgtggtagaaactactttggct
cttgacaactatcgtagggcttgtgattgtgggagaggtgctgtttttttctctgttgcc
aggggaaaagtagctgaaggaatagattttgatcggcattatggcagactagtgatcatg
tttggtgttcctttccagtacaccttaagcaagatactacttgcacggttggagtatcta
agggacacatttcagattaaggaaggggatttcctaacatttgacgccctgagacaagct
gctcaatgtgtgggccgagtgatccggtcaaaggctgattacggaatgatgatatttgct
gacaaaaggtatagccgtcatgacaagcgctctaaattgcctggttggattttgtctcat
ttacgtgatgcacacctgaatttgagcactgacatggcactgcatatagcacgcgagttt
cttcggaagatggctcaaccatatgacaagactggttctagcggtaagaaaaccctgtta
tcacaagaagatttggaaaagatggatgacagcggtaagcaggcgatgctgtattaa
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