Populus nigra (Lombardy poplar): 133693347
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Entry
133693347 CDS
T10372
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH17
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pnz03036
]
133693347
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
133693347
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Meiosis-specific proteins
Others
133693347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_C
ResIII
HHH_5
Cdd1
TTC3_DZIP3_dom
AAA_22
DNA_pol_lambd_f
IMS_HHH_1
HHH
Motif
Other DBs
NCBI-GeneID:
133693347
NCBI-ProteinID:
XP_061970533
LinkDB
All DBs
Position
1:14446497..14455238
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AA seq
1239 aa
AA seq
DB search
MDSYTLKSVSDLPPPFRSIFSFRYFNSLQSECFPVCYHSDVNMVISAPTGSGKTVLFELC
ILRLLSRFISEGRFVHVKGMLKTIYIAPSKALVQEKLRDWTQKFGSLGINCLELTGDNEF
YNTRTIQEADIILTTPEKFDSVTRYRIKDGGLSFFSDIGLLLIDEVHLLNDPRGAALEAI
VSRIKMLAHNPEMKSSPLSCVRFLAVSATIPNIEDLAEWLNVPVQGIKRFGEEMRPVKLT
TKVFGYAPAKNDFLFEKRLQNYIFDILMHYSRGKSALVFCSTRKGAQEAALKLSQTAMTF
GYSNPFIKDKEQQERLREASLSCSDKQLQSYILYGVGYHNGGLCLKDRSLIEGLFLKGDI
KILCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSMIQQMCGRAGRPPFDDTGM
VIIMTRRETVHLYENLLSGCEMVESQLLSCVTEHLTAEIVQLTVSDIARAIEWMKCSYLY
VRIKKNPEHYAVKKGISRDRIEKQMQEITVQKVNELSHHQMIWTDKDGFLLKPLEPGRLM
TRYYLKFNTMKHVMQTPENCSLEDALNVICHAEEIAWIQLRRNEKKLLNDINIDKDCRIR
FHINGDKQKRKKRIQTREEKIFVLANDCLTGDPSVHDLSLTQDMNSISSNGCRIAKCMKE
YFIFKRNYKGAINSTLLAKSLYQKLWDDSPYLLKQLPGIGMVTAKALHSMGIKSFDTLAE
ADPRRIEILTGRKFPFGNHIKDSLLSLPPKVNMSIEENECHRRGMSKFVVTLTRLSQPLQ
SSKRHYADMIVGTEEDNLIHFHEKIRVDEFSSPYSATILLSIPQQKKLTLKANLIFEEYI
GLDFHQKLLLMKESNPETNKNRCKQPSLFPPPGDVCVIEDESETTSYGPAEMLCNLTKSK
TINNSMPSFKLIDEDLELGVEGEPGFEIQDDSCKIISEQTIFEHIREKAKKFPLLTSSSN
VCSPSSEAMLLTRKRPRDKAIELDSAPNATEGTEGSKISLALLNVTSEQGERERYGHDSY
KLMTPKHHTSPGRFVADLVDDSGGLPSKSETSGLNGPTQDTIFDHIRKKAQYFPALSRTM
QFDSVAGTKEYSFENQPDFCIAASQVLKEVNTDRSTGDTIIISDSETRRGIDASSTEPGS
RVKDDKFSRSPHGERGSWSAPPRVSCINTDPSSIEMLPYDISMIKHNTRLAGSRNSTAYG
RKKQSSPKGSKRHCCSLEMAGKNREVDSFLGFTSVFSFL
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggattcgtatacgctcaagtccgtgtcagatctgccaccgccctttcgttcgattttt
agcttcaggtattttaattcattgcaaagtgaatgtttccctgtctgctaccattcagat
gtaaacatggtgatctcagcaccaaccggtagtggtaaaacagtgctctttgaactgtgc
atactgaggcttctgtcaaggtttatctctgaagggaggtttgtgcatgtcaaaggaatg
ctaaaaacaatctacatagccccatctaaggctttagttcaagaaaaactccgtgattgg
actcagaagtttggatcactggggataaattgcctggagctgactggtgacaatgaattc
tacaacacaaggactatacaagaagcagacattattctaactactcctgagaaatttgat
tctgtcactcggtatcgcataaaggatggtggcttgagctttttcagtgacattggcctg
cttcttattgatgaagttcacctactgaatgatcctcgtggagctgctttagaggcaatt
gttagtagaataaagatgcttgctcacaatcctgaaatgaaatcaagtcctctatcttgt
gttcgttttttagcagtttcagcaacaattccaaatatcgaggatcttgctgagtggctt
aatgttccagtccaaggtattaaaaggtttggagaagaaatgaggcctgtaaagttgaca
accaaagtttttggctatgctcccgcaaaaaatgattttctatttgaaaagcgccttcaa
aactatatttttgatattctgatgcactattcaagagggaaatctgctctagtattttgc
tcgacaaggaaaggggcacaggaagcagcattgaaactatctcagacagcaatgaccttt
ggttattcgaatcctttcattaaagacaaagaacagcaggaaaggctaagggaagcttca
ctttcatgcagcgacaaacaactgcagtcttatatcctatatggtgttgggtatcacaat
ggtgggctttgcctgaaagatcggagccttattgagggtctgtttcttaagggtgatatt
aaaattctgtgcaccactaacacccttgctcatggaatcaacttaccagcacatacagta
gtcataaaatcaacacaacacttcaacaaggaaaaaggtctttatatggaatatgatcgt
tccatgatacaacagatgtgtgggagggcaggtcggccaccatttgatgatacagggatg
gttataatcatgacaagaagagaaacagttcatttgtatgaaaatctcttgagtggatgt
gaaatggtggaatcacaattgctttcatgtgtgacagagcacttgactgcagagatagta
cagttgactgtttctgatattgcacgggcaattgaatggatgaagtgctcgtacttgtac
gttaggataaaaaagaaccctgagcattatgctgttaagaaaggaatttctagagaccgc
atagaaaagcaaatgcaagagattactgttcagaaagttaacgagttatcacaccaccaa
atgatctggactgacaaagatggttttctactgaagccactagagcccggacggttgatg
accaggtactatttgaaattcaacacaatgaagcatgtcatgcagaccccagaaaactgc
agcttggaagatgcacttaatgttatatgccatgccgaggaaattgcatggatacaactt
agacgcaatgagaaaaagcttctgaatgatatcaacattgataaagattgtcgaattcgg
tttcacatcaatggggataagcagaaacggaaaaagcgtattcaaactagagaggagaag
atatttgttttggcaaatgactgcttgactggggatccttctgttcatgatttatcccta
acccaggacatgaattctataagttcgaatgggtgtagaattgctaagtgcatgaaagag
tactttattttcaaaaggaattacaaaggagccatcaactcaacccttctagcaaaatca
ttatatcagaaactctgggatgatagtccatacttgctgaagcaattacctggcattgga
atggtgactgctaaggctctacattcaatgggaattaaatcatttgacacgctagctgaa
gctgatccaaggagaatagagattctcactggccgtaaattcccctttgggaaccacatc
aaggactctctcctatcattacctccgaaagtcaatatgagtattgaggaaaatgagtgc
cataggcgaggcatgtctaagtttgttgtgacattgactaggctatcacaaccactccag
tcatctaaacgacattatgctgatatgattgtcggtacagaagaagataacctgattcac
tttcatgagaaaataagagtggatgagttctcaagcccctatagtgcaacaattctcctg
tcaatcccgcaacagaaaaagctgactttgaaggctaatcttatttttgaagaatacatt
ggtcttgatttccaccaaaaacttctattgatgaaggaaagcaatccagaaacaaacaaa
aacagatgcaagcagccttccctgtttcctccacctggggatgtttgtgtcatagaagac
gaaagtgaaacgacatcttatggtccggctgaaatgctttgcaatttgacaaaatctaaa
acaataaacaattcaatgccaagtttcaaactcattgatgaggatttggagttgggagtt
gaaggcgagcctggttttgaaatccaagatgacagttgtaaaatcatatctgaacaaacg
atatttgagcacatacgtgaaaaggccaagaaattccctctcttgacttcttcaagcaat
gtttgttctccatcatcagaggccatgctcctcacaagaaaacgtccccgtgacaaggcc
attgaacttgatagtgcaccgaatgctacggaagggacagaaggaagcaaaatctcacta
gctttgctcaatgtgacttcagaacaaggagagagagaacggtatggacatgatagctac
aagcttatgactccgaagcatcacacgagccccggaaggtttgttgcagaccttgtggat
gattcaggtgggcttccttctaaatctgaaacaagtgggctcaatggtccaacacaagat
acaatatttgatcacataaggaaaaaagcccagtattttccagcgttgtcgagaaccatg
cagtttgactctgtagctgggacaaaggaatactcgtttgagaatcaacctgacttttgc
attgctgcttcgcaagttttgaaagaggtgaatactgatagatctaccggagataccata
atcatttcagattcggaaaccaggagaggcatagatgcatccagtacagagccaggatca
agggttaaagatgataaattttctcggagtccccatggagagcgcggaagttggagtgct
cctccgagagtctcatgcatcaacactgatccgtcttctatcgaaatgttaccttatgac
atttctatgataaaacataatacgcggctagcaggctcaagaaactccacggcgtatggc
aggaagaagcagtcttctccaaaaggatccaaaagacactgctgctcattggaaatggct
ggtaaaaatagggaagtggactcatttcttgggtttacgagtgtcttttcatttctctga
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integrated database retrieval system
