Populus nigra (Lombardy poplar): 133693435
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Entry
133693435 CDS
T10372
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
133693435
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
133693435
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
133693435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133693435
NCBI-ProteinID:
XP_061970641
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Position
5:complement(17630443..17633922)
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AA seq
771 aa
AA seq
DB search
MSGCLEFLKCVLCCVQEREEDPYVVLGSRSINNSSDVGSSCFRSVERINDGFQSFYSRPH
APIYSDDLPASPSALTQSSSKLFPPSAPPWPEPPASSSNQSQSSRAPATVLSRPSPFQPV
PSTTASKPSPQATTLSFKSSLLPPPTSTSSSKSSHQDPIPAFHPSPSPKPLPSFLKPPTS
SSNQSQSSRVPATVLSRPSPFPSVPSTTSSKPSPQATTLSFKSSPFPPPPSTSSSKSSHQ
DPNPAFHPSPSPKPLPSFLKPPASSSKPSPSSSKASPSSRPGPSSSSSKQPPSFKPTLSL
ASPNLINEQTKGSYSLVQKVMSPIYAVPKDIEDLIKRDIVPEVLNEMLSPSTYKDYFAAL
LYAEDFYIEKWSKFKLKNITLKLKDAAIIKKRGRNEYFGESHEKDNKTFVEFEIDSCREK
RPFLLSRDFAFARPSGQKTEPYQGVIYRVVRSTIVLVEFGEDFHLQHHSTCEYDVSFSFN
RVCLKRAHQAIEAASDPSFKNFLFPDFVHRKSIPTSTPLHFINHKLDAYQRSAVHEILSF
RGPPPYLVEGPLCSKEYSKQLSRIGLVVQEAVLQIYQSSSKHRILICAPINRTCDVLMQS
LKIDIPESDMFRANAAFREIDGVPIDILTSCVYKRDCFTCPSIRELRKFRVILSTFVSSF
RLHNEGIVAGHFSHIFLVNASSATEPEAMVALANLASENTAVIVTGAPGNHSGWVRSNIA
RENGLMTSYFERLRDSKPYWNSHPKFIKQLVDPESKSVDSYSYAHESVSYD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggtgtcttgaattccttaagtgtgtactttgttgtgtacaagaacgtgaagaa
gatccctatgttgtattaggttcaaggtcaataaataattcatcagatgttggatcaagt
tgctttaggtctgtggaaagaatcaatgatggatttcagagtttctatagtcgcccacat
gcacccatatattccgatgatctacctgcatctccctctgcattaactcaatcttcatca
aaattgttccccccttcggcacctccatggcctgaacccccagcatcatcttctaatcaa
tctcaatcttcacgtgcaccggcaacagttctttctagaccctctccatttcaaccagta
ccttcaacaactgcatcgaaaccatcacctcaagcgacaacattgtcattcaaatcatct
ctattaccacctccaacttcaacttcttcatcaaaatcatcccatcaagatcctattcct
gctttccatccatctccatctcctaaaccactcccatcatttcttaaaccgccaacttca
tcttctaatcaatctcaatcttcacgtgtaccggcaacagttctttctagaccctctcca
tttccatcagtaccttcaacaacttcatcgaaaccatcacctcaagctacaacattgtca
ttcaaatcatctccatttccacctccaccttcaacttcttcatcaaaatcatcccatcaa
gatcctaatcccgctttccatccatctccatctcctaaaccactcccatcatttcttaaa
cccccagcatcatcttctaaaccctctccatcttcatctaaagcatccccatcttcacgg
ccaggaccatcttcatcatcctctaagcagcctccatccttcaaaccaactctatctctg
gcttccccaaatttaattaatgagcagacaaaaggcagctactcgttggttcaaaaggtt
atgtcacctatttacgcggttcccaaggatattgaggacttgatcaagagagacatagtg
cctgaagttcttaatgaaatgttgtctccttccacatacaaggattattttgctgccctt
ctgtatgccgaggacttctacattgagaaatggagtaaatttaaattgaagaatattact
ctcaagttgaaagatgcagcaatcattaagaagcgtggcaggaatgaatacttcggtgaa
agtcatgaaaaggataataaaacctttgtagaatttgagattgactcatgtcgtgagaag
cggccatttcttttgtccagagactttgcctttgcacgaccttcaggtcaaaaaaccgag
ccatatcagggtgttatctatcgcgtggtgaggagcactattgtactggttgaatttggc
gaagattttcatttgcagcaccattcaacctgtgaatatgatgttagcttctcatttaac
agagtttgtttgaaaagggctcaccaagcgatagaagccgcttcagatccttcatttaaa
aatttccttttccctgattttgtccacagaaagagtatcccaacctctacacctctccat
tttatcaatcataaacttgatgcgtatcaaagatctgctgttcacgagattttgagcttt
cgaggaccaccaccttatcttgttgaaggtccactttgttcgaaagagtattcaaaacaa
ctatcaaggattggattggtggtccaggaagcagtactccaaatttatcaaagttcatca
aagcatcggattcttatatgtgcacccattaacagaacatgtgatgttctgatgcaaagc
ttaaaaattgatattccagagtcggatatgtttcgagcaaatgctgctttccgggagata
gatggggtgcctattgacatcctaacatcgtgtgtgtacaaaagggattgttttacttgt
ccatctattcgggaactaaggaaatttagagtaatcttgtctacttttgtaagtagcttt
cggctgcataatgaagggatagttgctggccattttagccatatttttttggtgaatgct
tcatcagctactgagccagaagcaatggtggctttggctaatttggctagtgagaataca
gcagtgatagttactggtgctccaggaaaccattcaggctgggttcgttccaatattgca
agggagaatgggctaatgacatcctacttcgaaagacttcgtgatagcaagccatactgg
aattcacatcctaagtttatcaagcagctggttgatcccgagagtaaatcagttgattct
tatagctatgcccatgaatcagtatcgtatgactaa
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