Populus nigra (Lombardy poplar): 133693559
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Entry
133693559 CDS
T10372
Name
(RefSeq) vacuolar protein sorting-associated protein 35A-like
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
133693559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133693559
Membrane trafficking [BR:
pnz04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
133693559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FliS
Urb2
Motif
Other DBs
NCBI-GeneID:
133693559
NCBI-ProteinID:
XP_061970777
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Position
5:complement(15766143..15773303)
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AA seq
793 aa
AA seq
DB search
MIADGVENEEKWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPHKY
YELYMRAFDELRKLEMFFKEEARRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVVDAVEFVL
QNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYKDTVLP
RVLEQVVNCKDEIAQFYLMDCIIQVFPDEYHLQTLEILLGACPQLQPSVDIKTVLSRLME
RLSNYAASSAEVLPEFLQVEAFSKLNNAIGKVIEAQVDMPIFGAVTLYSSLLTFTLHVHP
DRLDYADQVLGACVKKLSSKGKLDDSKATKQIVALLSAPLEKYNDIVTALKLSNYPRVME
YLDIETNKIMATVIIQSIMKNNTRISTADKVEALFELMTGLIKDLDGAEEEVDEDDFKEE
QNSVARLIQMLYNDDQEEMFQIICTVKKHIMTGGPKRLPFTVPPLVFLSLKLVRRLQGSS
QDQEENPFGDDSSTSPKKIFQLLNQTIEALSIVPAPELALRLYLQCAEAANDCDLEPVAY
EFFTQAYILYEEEVSDSKAQVTALHLIVGTLQRMHVFGVENRDTLTHKATGYSAKLLKKP
DQCRAVYGCAHLFWVDDQDNMKDGERVLICLKRALRIANAAQQMSNAARGNTGSVLLFVE
ILNKYLYFYEKGNPQITVAAIQSLIELITTEMQSDNSPPDPAADAFLASTLRYLQFQKQK
GGAISEKYEAIKV
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgatcgcagacggagtggaaaacgaagagaaatggttagcggcagggatcgctggcctt
caacaaaacgctttttacatgcatcgcgctctggattcgaataatttaagagatgctttg
aagtactcagcgcagatgttatcggagttacggacttcgaagctttctcctcataagtat
tatgaattatatatgagagcatttgatgaattgaggaagctggagatgttttttaaagaa
gaggcgcggcgtgggtgttcaattattgatttgtatgaacttgtgcagcatgctggtaac
atcttgccgagattgtatctcctatgtactgtaggatctgtatacattaaatctaaagaa
gctccagcaaaagatgttcttaaagatcttgttgaaatgtgtcgcggcattcagcatcct
gtacgtggcctcttcttaaggagttacctttctcaagtcagtagggataaattacctgat
atcggttcagagtatgaaggagatgctgacacggttgtggatgctgtggaatttgttctg
caaaatttcactgagatgaacaagctatgggtgcgaatgcaacatcagggacctgcccgg
gaaaaggagaagcgggagaaagaaaggagcgagctgcgtgatcttgttggcaagaacctg
catgtcctcagccagatagagggtgttgaccttgacatgtacaaagatactgtgcttccc
agagttcttgaacaggttgtcaattgtaaagatgaaatcgcccagttctatctgatggat
tgcataattcaagtcttccctgatgaatatcatttgcaaactcttgagatattgttgggt
gcttgcccccaacttcagccatctgttgacatcaagacagtgttatctagattgatggag
aggctatcaaattacgctgcttcaagcgcagaagttttacctgaattcttgcaagtagaa
gccttctctaaattgaacaatgccataggaaaggtgatagaagcacaagttgatatgcca
atttttggagctgtaactctatattcatctcttcttacatttactctccatgttcaccct
gaccggctggattatgctgatcaagtgctgggagcatgtgttaagaaactatccagcaaa
ggaaagcttgacgacagcaaagccacaaaacaaattgttgctcttttgagtgctccatta
gagaaatataatgatattgtcactgcattgaagctttcaaactatcctcgtgtaatggaa
taccttgatattgagacaaataaaattatggcaactgttataattcaaagtattatgaaa
aataacacacgcatctctactgctgacaaggttgaggcgttatttgaattaatgacaggg
cttatcaaggatctggatggggctgaagaagaggttgatgaagatgatttcaaagaggag
cagaattccgttgcacgtcttattcagatgctgtacaatgacgatcaagaggaaatgttt
cagatcatatgtacggtgaagaagcatatcatgacaggaggaccaaagcgcctacccttc
acagttcccccacttgtttttttgtctctcaagttggtaaggagacttcaaggcagcagc
caagatcaggaggaaaacccttttggagatgattcatcaacttcacctaagaaaattttc
cagctcttgaatcagacaattgaggctctgtcaattgttccagcacctgaattggcatta
cgattgtacttgcagtgtgctgaggctgccaatgactgtgatctagagcctgttgcatat
gaatttttcacccaagcatatattctatacgaggaagaagtctcagattcaaaagcacag
gtgacggcactgcatttaatagtaggcacccttcagaggatgcatgtttttggtgtagag
aatagggatactttaacccacaaggccactgggtattcggctaagcttttaaagaagcct
gatcagtgtagagcggtttatgggtgtgcacatctattctgggttgacgatcaggataac
atgaaagatggagagagggttctgatttgcctgaagcgtgctttgcgaattgcaaatgct
gctcaacaaatgtccaacgcggcgcggggtaacactggatcagtgttgctctttgttgag
attctgaacaagtatctttacttctacgagaagggaaacccacaaatcacagtggctgca
atccagagcctgattgaattgattacaactgagatgcaaagtgacaacagtccaccagat
cctgctgctgatgcattcttagccagcacacttagataccttcagttccagaaacagaaa
ggtggtgcaattagtgaaaagtacgaggccatcaaggtgtga
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