KEGG   Populus nigra (Lombardy poplar): 133693565
Entry
133693565         CDS       T10372                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    133693565
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pnz03019]
    133693565
   03036 Chromosome and associated proteins [BR:pnz03036]
    133693565
Messenger RNA biogenesis [BR:pnz03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     133693565
Chromosome and associated proteins [BR:pnz03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     133693565
    COMPASS/SET1 complex (yeast)
     133693565
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40_WDHD1_1st WD40 WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta WDR55 EIF3I Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_TEP1_2nd NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_VPS8 Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_WDR36-Utp21_1st Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_ACSF4 Beta-prop_Vps41 PAC11 TRM82_WD Beta-prop_SCAP WDR90_beta-prop_4th KNTC1_N Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 Beta-prop_WDR35_TULP_N Cytochrom_D1
Other DBs
NCBI-GeneID: 133693565
NCBI-ProteinID: XP_061970781
LinkDB
Position
5:complement(15441946..15445970)
AA seq 332 aa
MVGTQQEREEKVSLELTEEILQSMETGMVFRDYNGRISSMDFHKTSSYLVTASDDESIRL
YDVAGAACLKAINSKKYGVDLVCFTSDPTTVLYSSKNGWDESLRLLSLNDNKYLRYFKGH
HDRVVSLSLCSRKECFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGIVFAIAF
GGYIRMFDSRKYEKGPFDIFSVGGDVSDANAVKFSNDGRLMLLTTMDGHIHVLDSFRGTL
LSTYNVKPVSINSTLEASFSPEGKFVVSGSGDGRVHAWSVRSGKEVASWVTYETEPHVIK
WAPGSLMFATGSSELSFWIPDLSKLAAYVGRK
NT seq 999 nt   +upstreamnt  +downstreamnt
atggttgggacgcaacaagagagagaagagaaagtatcgttagaactaacagaagaaatt
cttcaaagcatggaaactggcatggtttttagagattataacggaagaattagttccatg
gattttcataagacatcaagttatctagtaactgctagtgacgatgaatctattcgactt
tacgatgttgccggcgccgcatgcttgaaggcaattaatagcaaaaagtatggggttgat
ctggtttgcttcacatctgatcctacaactgttttatactcctcaaaaaatggatgggat
gaatctctgcgacttctctcgttgaacgataacaagtatttgcggtattttaaaggtcac
catgacagggttgtctcgctaagtttgtgctctcgcaaagaatgctttatctccggttct
cttgatcgaactgttttgctttgggatcaacgagctgaaaagtgccagggtcttttacgt
gtacaaggaaggcctgctgcagcatatgatgatcaagggatagtctttgcaattgcattt
ggaggatacattagaatgtttgattctcgcaagtatgaaaagggtccttttgacatcttt
tctgttggaggagatgtatctgatgcaaatgcggtaaagttcagcaatgatggaagacta
atgctcttgactaccatggatgggcatattcatgtacttgattcattccgtggaacactt
ttatctacatacaatgtgaaaccagtttcaatcaattccacattagaggcatctttcagt
cctgaaggaaagttcgttgtatcaggttcaggtgatggccgagtgcatgcttggagtgta
aggagtgggaaagaagttgcgagttgggtgacatatgaaactgagcctcatgtcataaaa
tgggcacctggaagtcttatgtttgctactgggtcttctgagctatcattttggattccg
gacttgtctaaattagcagcttatgttggaaggaagtag

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