Populus nigra (Lombardy poplar): 133693589
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Entry
133693589 CDS
T10372
Name
(RefSeq) protein transport protein SEC24 C-like isoform X1
KO
K14007
protein transport protein SEC24
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133693589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133693589
Membrane trafficking [BR:
pnz04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
133693589
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_BS
Sec23_helical
zf-Sec23_Sec24
Gelsolin
Motif
Other DBs
NCBI-GeneID:
133693589
NCBI-ProteinID:
XP_061970809
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Position
5:complement(20802559..20816451)
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AA seq
1111 aa
AA seq
DB search
MTSNVPPGAPRQSPPPNYNPNYQQNPNILPDNFQNLNLNRPPSMANSATRPSPFSQPSPF
PSSVPSPQFSRPGASPIGAVSRPSVPPSGSPSTFSSNVAPGRPTVPPFSQPPPFGSRPPP
GSFQSYTSGGMVAGPVSGALPVGAHPSPAASSSSHPPQNVPPSSSFGGLVSNGPPAPAFQ
SSPRFPPSVSAPQQQPMGPPPTMGVARSPPQSMRPLMGSSGFSGQPVAPFSAPPQGTPFY
APPQGAPFYAPPQGAPFSAPPQGAPFSAPPQGAPFSAQQGMTPPPIGSPFAPQMQPQSVA
QPPPIPGSAQPPRMFGMPPLLPNQMTAISPVIGQTGSPLSGASKIDPNQIPRPIPGSSVI
LHDTRAGNQANPPPPATSDYIVTDTGNCSPRYMRCTINQIPCTVDLLSTSGMQLALLVQP
LALPHPSEEAVQVVDFGESGPVRCSRCKGYINPFMKFIDQGRRFICNLCGFTDETPRDYL
CNLGPDGRRRDADERPELCKGTVEFVATKEFMVRDPMPAVYFFLIDVSMHAIQTGATAAA
CSSISQVVADLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDIHDVYTPLQTDVI
VPLSECRQHLELLLESIPTMFQNSRIAESSFSAAIKAAFLAMKNTGGKLLVFQSVLPSVG
VGALSAREAEGRSNISTGEKEAHKLLQPADKTLKEMAIEFAEYQVCVDVFITTQTYVDIA
SISVIPKTTGGQVYYYYPFSAVSDPAKLYNDLRWNVTRPQGFEAVMRVRCSQGIQIQEYH
GNFCKRIPTDIDLAVIDCDKTIMVTLKHDDKLQDGTECAFQCALLYTTVYGQRRIRVANL
SLPCTNNLSNLFRLADLDSQFVCFLKQAANEIPSNPSLVVQEQVTNFCINILLSYRKFCA
TVSSSGQLILPEALKLLPLYTLALIKSTGLKVNGRIDDRSFWISYVSSVSTPLAIPLVYP
RMIAIHNLDSQEADGSRIPPALVLSSEYVSEDGIYLLENGQDGLIYIGNSVNSDTLQKLF
GISSVAEIPTQYSQFVLEQYDNPLSKKLNNVVNEIRRQRCSFLRLKLCKKGDPSGMSFFS
YLVEDKVPVGGLSYVEFLVHIHRQIQVKMSS
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgacttctaacgtgcctccaggggcacctagacaatccccaccacctaattataaccca
aattatcagcaaaacccgaatattttacctgataatttccagaatttgaatctcaatcgt
cccccttcaatggcaaattcagctaccaggccttcgccattcagccaaccatcaccattt
ccctcctcagttccttcaccgcaattttccaggcctggtgcatcacctattggtgctgtt
tctcgaccttcagtgcctccctctggatctccatccacattttcctcaaatgtggcccct
ggtagacctactgtgcctcctttcagtcagccaccaccctttgggtccagaccacctcct
gggtcattccaatcctataccagtggtggtatggtagcgggtcctgtctctggtgcactg
ccagtaggtgctcatccaagtcctgctgcatcatcttcttcgcatcctcctcagaatgtg
cccccatcaagttcatttggtggtttagtaagtaatgggccaccagcccctgctttccag
agctctccacgttttcctccctctgttagtgcaccacagcaacaacctatgggtcctcca
ccaacaatgggggtggctcgctcacccccccaaagcatgcgccctttaatggggagttca
gggtttagtggccaaccagttgctccattttctgcaccacctcaagggacaccattttat
gcaccacctcaaggggcaccattttatgcgccacctcaaggggcaccattttcagcgcca
cctcaaggggcaccattttcagcaccacctcaaggggcaccattttcagcacagcaaggg
atgacaccaccacctataggttctccttttgcaccacagatgcaaccacagtctgttgct
caacctccaccaattcctggttctgcacaaccacctagaatgtttggaatgccgccacta
ctaccgaatcaaatgactgctatatcaccagttattggtcaaactggaagtcctttatca
ggggcatcaaagattgatcccaatcaaattccccggcccattccaggttcctctgtgatc
ctacatgatactcgtgcaggaaatcaggccaacccacctccgcctgctacaagtgactac
attgttacagacactgggaattgcagtccacgctacatgaggtgtaccatcaatcagatt
ccatgcacggttgatttgttatcaacatctggcatgcagttggctttgttggtccaacct
ctggcccttcctcatccatctgaggaggctgtccaggttgttgattttggagaaagtggt
cctgttcgctgttctcgttgcaaaggctacataaatccttttatgaaatttattgatcaa
gggaggcgatttatatgcaatttgtgtgggttcactgatgaaactccccgtgactacctc
tgcaatctaggtccagatggtagacgtagagatgctgatgaaaggcccgagctatgcaag
ggaacagttgaatttgttgccacaaaagaattcatggttcgtgatcccatgccggctgtg
tatttcttcctaattgatgtatccatgcatgccatacaaactggtgcaactgctgcagct
tgcagctcaattagtcaagttgttgctgatcttccagaagggccacggacaatggtgggc
attgcaacatttgattcaacaatccatttttacaatttgaaacgggcattacaacagcca
ctgatgcttattgtacctgatatacatgatgtttatactcctttgcaaactgatgttatt
gttccgctttctgagtgccgtcaacatttggagctattattggaaagtattccaactatg
tttcagaatagtagaattgctgaatcatctttcagtgcagcaatcaaggcagcattcttg
gcaatgaaaaatactggagggaagcttttggtatttcaatcagtcttaccttctgttggt
gttggagccctttctgctcgagaggctgagggaagaagtaacatctctacaggggagaag
gaggcccataaattactccaaccagccgacaaaactttgaaggaaatggccattgaattt
gctgaatatcaggtctgtgttgatgtgttcatcactacccagacttatgtggacattgct
tctatctctgtcatacctaaaacaactggagggcaggtttattattactatcctttctct
gctgtctctgatccagcaaagctgtacaatgatcttagatggaatgtcacaaggcctcaa
ggttttgaggcagtgatgcgtgtgaggtgcagccagggcattcaaattcaagaataccat
ggaaacttttgcaagcgcattccaacagatattgacctggctgtgattgattgtgacaaa
actataatggtcacattaaaacatgacgataaattgcaggatggcacggaatgtgctttt
cagtgtgccctcctctacaccactgtgtatggccaaagaagaattcgtgttgcaaattta
tcactgccatgcacaaacaatttaagtaatttgttccgcttggctgacttggattcccaa
tttgtgtgtttcttgaagcaagcggcaaatgaaatcccttccaacccatccttggttgtc
caagaacaagtgacaaacttttgcataaacattctgctttcatatcgcaaattttgtgca
acagtatcgtcatcaggacaactcatccttccagaggcacttaaacttctgcccctgtac
acccttgcattaattaaaagtacagggttgaaagtcaatgggaggattgatgatcggtca
ttttggatcagttatgtttcctcagtttctacacctttagcgattcccttggtgtatcct
aggatgattgcaattcacaaccttgattcacaggaagcagatggatctcgtatccctcct
gcactcgtgctttctagcgaatatgtgagtgaggatggaatttatcttcttgagaatggc
caggatggcttaatatatattgggaactcagttaattcagataccttgcaaaaacttttt
ggcatttcctcggtagctgaaattccaactcagtattctcagtttgttctggagcaatat
gacaatccactatcaaagaaactaaataatgtggtgaatgagatacgacggcaaagatgt
tctttcctgcgcttaaagttgtgtaaaaaaggagatccatcaggaatgtcattcttctca
tatttggttgaagacaaggttccagtcggtggtctctcctatgtagaattcctagtgcat
atccatcggcaaattcaagtaaaaatgtcttcataa
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