KEGG   Populus nigra (Lombardy poplar): 133693698
Entry
133693698         CDS       T10372                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03082  ATP-dependent chromatin remodeling
pnz03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    133693698
   03083 Polycomb repressive complex
    133693698
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pnz03036]
    133693698
Enzymes [BR:pnz01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     133693698
Chromosome and associated proteins [BR:pnz03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     133693698
   HDAC complexes
    Sin3A-HDAC complex
     133693698
    BRAF-HDAC complex
     133693698
    REST complex
     133693698
    SHIP complex
     133693698
    MiDAC complex
     133693698
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     133693698
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    133693698
  Chromatin remodeling factors
   NuRD complex
    133693698
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 133693698
NCBI-ProteinID: XP_061970958
LinkDB
Position
1:1332560..1336793
AA seq 429 aa
MRSKDRIAYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL
AQFHSEDYVEFLHRITPDTQHLFAGELARYNLGEDCPVFENLFEFCQIYAGGTIDAAHRL
NNQLCDIAINWAGGLHHAKKCGASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKELGEREGKFYAINVPLKDGIDDTSFTRLFKT
IISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPENEYIKYFAPDYSLKSPGGLMENLNSKSYLSTIK
MQVLENLRCIQHAPSVQMQEVPPDFFIPDFDEDEQNPDERMDQHTQDKQIQRDDEYYEGD
NDNDHADGS
NT seq 1290 nt   +upstreamnt  +downstreamnt
atgcgctccaaagacagaattgcctatttctatgatggtgatgtgggcagtgtttatttt
ggaccaaaccatccaatgaagccacacagactttgtatgacacaccatcttgttctctct
tatgagctacataagaagatggaaatatatagaccacacaaggcatatcctgttgagctt
gctcagtttcattccgaggattatgttgaatttttgcatcggattacgccggatactcag
cacttgttcgcgggggaattggctagatataaccttggagaagattgccctgtcttcgaa
aacttgtttgaattttgtcagatttatgctggtggaactatagatgctgcacataggttg
aacaatcaactgtgtgacattgctataaattgggctggtggattacatcatgcaaaaaag
tgcggggcatctggtttttgttacatcaatgacctggttttggggattttggagcttctg
aaacaccatgctcgtgttctgtacattgatatagacgttcatcatggtgatggtgttgaa
gaagccttttatttcactgacagggtgatgactgtgagttttcacaagtatggagatatg
ttctttcctggaactggtgatgttaaggaactaggagaaagagaaggaaaattttatgct
ataaatgttccactgaaagatggaatcgatgacactagcttcactcgactatttaaaaca
atcatttccaaggttgtagaaacttatcagccaggtgcaatagttcttcaatgtggagca
gattcgttggctggggaccgcttgggctgcttcaatctttccattgatgggcatgcagaa
tgtgttaggtttgtgaagaaattcaacttgcccttgttggttacaggaggtgggggatac
acaaaagagaatgttgctcgatgttggaccgttgaaacaggagttcttttagacacagaa
ctgcccaatgagattccagaaaacgagtatattaaatattttgctcctgattattcattg
aaaagtcctggtggactcatggagaacttaaatagcaaatcttatcttagcacaatcaaa
atgcaagtactagagaatcttcgttgcatccaacatgctccaagtgtacagatgcaagag
gtacctcctgacttcttcattcctgattttgatgaagatgagcaaaaccctgatgagcgc
atggatcagcatacccaggacaagcaaatccaacgcgatgatgaatattatgaaggcgac
aatgataacgaccatgcggatggctcatga

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