Populus nigra (Lombardy poplar): 133693698
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Entry
133693698 CDS
T10372
Name
(RefSeq) histone deacetylase 9
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03082
ATP-dependent chromatin remodeling
pnz03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133693698
03083 Polycomb repressive complex
133693698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pnz03036
]
133693698
Enzymes [BR:
pnz01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
133693698
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
133693698
HDAC complexes
Sin3A-HDAC complex
133693698
BRAF-HDAC complex
133693698
REST complex
133693698
SHIP complex
133693698
MiDAC complex
133693698
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
133693698
Heterochromatin formation proteins
Other heterochromatin formation proteins
133693698
Chromatin remodeling factors
NuRD complex
133693698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
133693698
NCBI-ProteinID:
XP_061970958
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All DBs
Position
1:1332560..1336793
Genome browser
AA seq
429 aa
AA seq
DB search
MRSKDRIAYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL
AQFHSEDYVEFLHRITPDTQHLFAGELARYNLGEDCPVFENLFEFCQIYAGGTIDAAHRL
NNQLCDIAINWAGGLHHAKKCGASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKELGEREGKFYAINVPLKDGIDDTSFTRLFKT
IISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPENEYIKYFAPDYSLKSPGGLMENLNSKSYLSTIK
MQVLENLRCIQHAPSVQMQEVPPDFFIPDFDEDEQNPDERMDQHTQDKQIQRDDEYYEGD
NDNDHADGS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgcgctccaaagacagaattgcctatttctatgatggtgatgtgggcagtgtttatttt
ggaccaaaccatccaatgaagccacacagactttgtatgacacaccatcttgttctctct
tatgagctacataagaagatggaaatatatagaccacacaaggcatatcctgttgagctt
gctcagtttcattccgaggattatgttgaatttttgcatcggattacgccggatactcag
cacttgttcgcgggggaattggctagatataaccttggagaagattgccctgtcttcgaa
aacttgtttgaattttgtcagatttatgctggtggaactatagatgctgcacataggttg
aacaatcaactgtgtgacattgctataaattgggctggtggattacatcatgcaaaaaag
tgcggggcatctggtttttgttacatcaatgacctggttttggggattttggagcttctg
aaacaccatgctcgtgttctgtacattgatatagacgttcatcatggtgatggtgttgaa
gaagccttttatttcactgacagggtgatgactgtgagttttcacaagtatggagatatg
ttctttcctggaactggtgatgttaaggaactaggagaaagagaaggaaaattttatgct
ataaatgttccactgaaagatggaatcgatgacactagcttcactcgactatttaaaaca
atcatttccaaggttgtagaaacttatcagccaggtgcaatagttcttcaatgtggagca
gattcgttggctggggaccgcttgggctgcttcaatctttccattgatgggcatgcagaa
tgtgttaggtttgtgaagaaattcaacttgcccttgttggttacaggaggtgggggatac
acaaaagagaatgttgctcgatgttggaccgttgaaacaggagttcttttagacacagaa
ctgcccaatgagattccagaaaacgagtatattaaatattttgctcctgattattcattg
aaaagtcctggtggactcatggagaacttaaatagcaaatcttatcttagcacaatcaaa
atgcaagtactagagaatcttcgttgcatccaacatgctccaagtgtacagatgcaagag
gtacctcctgacttcttcattcctgattttgatgaagatgagcaaaaccctgatgagcgc
atggatcagcatacccaggacaagcaaatccaacgcgatgatgaatattatgaaggcgac
aatgataacgaccatgcggatggctcatga
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