Populus nigra (Lombardy poplar): 133693755
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Entry
133693755 CDS
T10372
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-3-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03022
Basal transcription factors
pnz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133693755
09124 Replication and repair
03420 Nucleotide excision repair
133693755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133693755
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133693755
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
133693755
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
133693755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GRAM
Ribosomal_bL9m_C
SHOCT
Motif
Other DBs
NCBI-GeneID:
133693755
NCBI-ProteinID:
XP_061971025
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Position
5:20014476..20022062
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AA seq
595 aa
AA seq
DB search
MASGQVSKRVKYKSSVKDAGTPGRLFLTLERLMFKPNSPNSATKLNMEFRFIKNHRYTKE
GSNKAPMLNLTSSQGVNYIFEFESYDDLHVCKECVGKALSKTGETPKPVDTSEVPSEQPS
TEELLSRMNMLRENSELQKLHKQFVSDGVLTEAEFWATRKKLLGGNTSKNSKQRTGLKSV
MISDTKPLTDGRTNKVTFTLTPEIVREIFAEKPAVHQAYLTLVPKKMSERDFWSKYCRAE
YLQHAKNANAAAAAAAEAAEDEELALFLKPKPDNILASETRRKIRGVDPTLDMEADEGDD
YTHLPDHGIVRDGSKEITKFQHELYRRTLSQDLNRHAAVVLQGTPIDEEQLKDTQTVAEA
LERSKQGQNTSNEEADINANQERLSRILKMMEIDDLQASIDLPLAPLSIKDPRDYFDSQQ
ASALKTSRDTSIGNDPVRCTLSVEESYASLRDSISHIKNTGLVDPMVTPEVAAKVLSVLT
HNISSTKYDLGNNPGLSVLDTLPNSIKEELIYHWTSLQELLRHYWSSYPITTMYLYNKVS
RLKDAMSKIDSKLQELKESVQSDLRHQVTLLIRPMQQALEVAMQHYDADMQKRSS
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgggcaagtgtcaaaacgagtcaagtacaagagctcagtgaaagacgctggc
actcctggtcgactatttttgactttggagaggttaatgttcaagcctaacagtcctaat
tctgctacaaagcttaatatggagtttagattcattaaaaatcataggtacactaaggag
ggatcaaataaagcaccaatgcttaatctcacttcgagtcagggtgtgaattacatattt
gagtttgaaagttatgatgatctccacgtttgtaaagagtgtgtgggcaaagccctttcg
aagaccggagagacaccaaagcctgtagacacttctgaagttccctctgaacaacctagt
acagaagaactgctttccaggatgaatatgctgcgagaaaatagcgagttgcagaagctt
cataagcagtttgtgagtgatggtgtgttgacagaagcagaattttgggcaactaggaag
aagttgcttggtgggaacactagcaaaaattcaaaacaacggacaggccttaaaagcgtc
atgatttcagacaccaagcccttaactgacggtcgaacaaacaaagtcacatttactttg
acgcctgagattgttcgtgagatttttgcagagaaaccagcagttcaccaagcatacttg
actttagttcccaaaaagatgtcagaaagggatttctggagcaaatattgtagagcagaa
tacctccagcatgcaaaaaatgctaatgctgcggctgcagcagcagcagaagctgctgaa
gatgaggagcttgctcttttcctgaaacctaaacctgacaatattttggccagcgaaact
cggcggaagatcagaggtgttgatccaactctagacatggaagctgatgaaggggatgat
tatacacatcttccagatcatggcatcgtccgtgacggtagcaaggaaataaccaaattt
cagcatgaactatatagaagaactctttcacaggacctaaacaggcatgctgctgttgtt
cttcaaggaacacctatagatgaggagcaattgaaagacacacagactgtagcagaggca
cttgaacggtcaaaacagggacagaatacttcaaatgaagaagctgatatcaatgcaaac
caggaaagattgagtagaattttaaaaatgatggaaattgacgatcttcaggcgtcaatt
gatcttcctttggcaccactttctatcaaggatccaagggattactttgattctcaacaa
gctagtgctcttaaaacttccagagataccagtattggaaatgatccagtaagatgcacc
ctgagtgtggaagaatcatatgcttctttgagggactccatttcccacataaaaaacaca
ggattggttgatcccatggttacacctgaagttgctgctaaggtcctttcggtcttgacc
cacaatatctcaagcaccaaatatgatcttgggaataatcctgggctaagtgttttggac
acgttgccaaattcaattaaagaggagctgatatatcactggacgtctcttcaagagtta
ttgaggcattactggtcatcatatccaatcactactatgtatctttataataaggtaagc
aggttgaaggatgcaatgtcaaaaattgattctaagctacaggagctgaaggaatctgtg
cagtcagatcttcgacatcaggttactctactaattcgaccaatgcaacaggctctagag
gtagctatgcaacattatgatgcagacatgcagaagagatcatcgtga
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