Populus nigra (Lombardy poplar): 133693818
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Entry
133693818 CDS
T10372
Name
(RefSeq) replication factor C subunit 2-like
KO
K10755
replication factor C subunit 2/4
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03030
DNA replication
pnz03410
Base excision repair
pnz03420
Nucleotide excision repair
pnz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133693818
03410 Base excision repair
133693818
03420 Nucleotide excision repair
133693818
03430 Mismatch repair
133693818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnz03032
]
133693818
03036 Chromosome and associated proteins [BR:
pnz03036
]
133693818
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133693818
DNA replication proteins [BR:
pnz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
133693818
DNA Replication Termination Factors
ELG1-RFC complex
133693818
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
133693818
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
133693818
Check point factors
HRAD17(Rad24)-RFC complex
133693818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_22
Rad17
RuvB_N
AAA_16
Mg_chelatase
AAA_11
AAA_5
nSTAND3
AAA_14
AAA_24
AAA_assoc_2
SLFN-g3_helicase
ResIII
AAA_2
AAA_19
PhoH
DUF3853
AAA_28
DNAX_ATPase_lid
AAA_7
AAA_30
DUF815
AAA_25
RNA_helicase
Parvo_NS1
NPHP3_N
bpMoxR
TIP49
AAA_17
AAA_18
IstB_IS21
NB-ARC
Motif
Other DBs
NCBI-GeneID:
133693818
NCBI-ProteinID:
XP_061971128
LinkDB
All DBs
Position
5:6195849..6199756
Genome browser
AA seq
342 aa
AA seq
DB search
MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL
AIAHQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIII
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMS
NRILHICNEEGLTLDTEALSTLSSVSQGDLRRAITYLQGAARLFGSSISSKDLISVSGAI
PREVTEAIYAACKNGDFDLANKEVNDVIAEGYPVSQMLAQLFEVVVEVDDISDEQKARIC
KSLATADKCLVDGADEYLQLLDVVSNTMRALCNMPQEFSYDI
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggcgccattattgcagagctcacagccatgggtggagaaatatcgaccaaagcaagta
aaggatgtagctcaccaagatgaggtggttcgcgtcctcaccaacactctcgagaccgca
aattgcccacacatgcttttttatggcccacctggtaccggaaaaaccaccactgccctg
gccatcgcacaccagctctacgggcctgaactctacaagtctagggttctggaactaaat
gcaagtgatgaccgtggaatcaatgttgttcggactaagatcaaggattttgctgctgtg
gctgtaggttctggtcagcgtcaaggggtttacccttgtccaccttataagattatcatc
ctagatgaggcagattcgatgactgaagatgctcagaatgccctgagacgtacaatggaa
acttactccaaagttactagattcttcttcatatgtaattacattagcaggatcatagag
ccgcttgcttcaagatgtgcaaaattcaggttcaagccacttccagaagaaatcatgagc
aatcgtatattgcacatttgtaatgaagaaggcctcactctggacacagaggctctctca
accttaagctctgtctcacaaggtgatcttcgccgggctatcacatacttgcaaggagct
gctcgcctatttggatcgtcaatttcatccaaagacctcataagtgtgtcaggggccatt
ccacgagaggttactgaggcaatttatgcagcatgcaaaaatggtgactttgatttggcg
aacaaggaagtaaatgatgtaattgcagaaggatatccagtctctcagatgcttgctcag
ttatttgaggtggtggttgaagtagatgacatatcagatgagcaaaaggctcgcatatgc
aagagtttggctactgctgataagtgtcttgttgatggtgcagatgagtatttgcagctg
ctagatgtggttagcaacacaatgcgagctctttgcaacatgccacaagaattctcttat
gatatttag
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