Populus nigra (Lombardy poplar): 133693842
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Entry
133693842 CDS
T10372
Name
(RefSeq) vacuolar protein sorting-associated protein 35B-like isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
133693842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133693842
Membrane trafficking [BR:
pnz04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
133693842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
133693842
NCBI-ProteinID:
XP_061971161
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All DBs
Position
5:1121127..1127956
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AA seq
790 aa
AA seq
DB search
MILAGIEDEDKWLAEGIAGIQHNAFYMHRALDANNLRDALKCSALMLSELRTSKLSPHKY
YDLYMRAFDELRKLEMFFKDESRHGVSIVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDALKDLVEMCRGVQNPIRGLFLRSYLAQVSRDKLPNLGSEYEGGEDTAMDAVEFVL
QNFTEMNKLWVRMQHQGPVRIREKLEKERNELRDLVGKNLHVLSQIEGVNLEIYRDTVLP
RVLEQIVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLME
RLSNYAASSPDVLPEFLQVEAFAKLSSAIGKVIEAQVDMPIVGAVTLYVSLLTFTLHVHP
ERLDYVDQVLGACVKLLFGKPKLKEGRATKQIVALLSAPLEKYNDIVTALTLSNYPHVMD
CLHDETNKVMAMVIIQSIMKNNTCISTADEIEVLFELLKGLIKGLDETAADELDEEDFNE
EQNSVARLIHMLYNDDSEEMLKIICTVRKHIMAGGPTRLPFTVPPLIFSALRLVRKLQAQ
DGNVVGEEEPATPKKIFQLLNETIEALSSVPSPELALRLYLQCAQAANDCDLEPVAYEFF
TQAFILYEEEVVDSKAQVTAMHLIIGALQRMNVLGVENRDTLTHKATGYSAKLLKRPDQC
RAVYACSHLFWVDEKDGIRDGERVLLCLKRALRIANAAQQMANAASGTSGPVTLFVEILN
KYLYFFEKGNPQVTSAAIQGLVELITNEMQSDSTTPDPASDAFFASTIRYIQFQKQKGGV
VGEKFGPIKV
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgatcttagccggaatagaagacgaagacaaatggctagcagaaggaatcgccggcatt
caacacaacgccttttacatgcatcgcgctttggacgccaacaatctccgagacgctctc
aaatgctcagctctaatgctatcagagcttcgaacttctaaactctctccgcacaaatac
tacgatctctatatgagagcgtttgatgaattgaggaaactagagatgtttttcaaagac
gagagtaggcatggcgtttcgattgttgatttatacgaactcgtgcagcatgctggcaat
atattgcctagactgtatctactgtgtacggtaggatcagtgtatatcaaatcgaaggaa
gctccggctaaggatgcgctcaaggatcttgtagagatgtgtcgcggtgttcaaaatccg
attcgaggattgtttttgagaagttatcttgctcaagttagcagagataaattacccaac
ctcgggtccgagtatgaaggaggtgaggacacagcaatggatgcagtagaatttgtgctg
caaaatttcaccgagatgaataaactttgggttcggatgcagcatcaggggcctgttagg
attagagagaagctggaaaaggaaagaaatgagcttcgcgatcttgtagggaagaatctc
catgttcttagtcagattgagggcgtgaaccttgaaatttacagagacactgttcttccc
agagttttagagcagattgtcaactgtaaagatgagctggcgcagtattatttaatggac
tgcataattcaagtctttccagatgagtaccacttgcagacccttgagacattgttgggg
gcctgcccccagcttcagccaacagttgacattaagacagtgctatcacggttaatggaa
agattgtccaattatgctgcttcaagtccggatgttttacccgagttcctgcaagtagaa
gcttttgctaaattgagcagtgctattggaaaggtgattgaagcacaggttgacatgcct
attgttggagccgttactttgtatgtgtctctcctcacatttacactacacgttcatcct
gaacgccttgattatgtggatcaagtactgggggcatgtgttaagctcctctttggcaag
ccaaagcttaaagagggcagagcaacaaaacaaattgttgcacttctgagtgctccatta
gaaaagtacaatgacattgtcactgccttaacgctgtctaattaccctcatgttatggac
tgtcttcatgatgaaacaaataaagtcatggcaatggttattattcagagcattatgaaa
aataatacttgcatttctactgctgacgagattgaggtgttgtttgaattattgaaagga
ctgataaagggtttggatgagactgctgcagatgagctcgacgaggaggatttcaatgaa
gaacaaaattctgtcgctcgccttatacatatgctttataatgatgattcggaggaaatg
ttgaagattatctgcactgtgaggaagcatataatggctggagggccaacacgattacct
tttacagttcctcctcttatattctctgcactcaggttggtgagaaagttgcaagctcag
gatggaaatgtagtaggagaagaagagcctgcaacacctaagaaaatttttcagctcctg
aatgagacaattgaggctctttcgtcagttccctcacctgagctggcattaaggttgtac
ttgcaatgtgctcaggctgccaatgactgtgatcttgagccagttgcttatgaatttttt
acacaggcattcatattatatgaagaagaagttgtggactcaaaggcccaggtgactgca
atgcatctaataattggggctctccagaggatgaatgtattgggtgttgagaacagggac
actctaacacacaaggccactggatattctgcaaagcttttgaagagacctgatcagtgc
agagcagtgtacgcttgctcacatctattttgggttgatgaaaaggatggcatcagggat
ggggaaagggtcctcctttgcctcaagcgtgccttgagaattgcaaatgcagctcagcag
atggccaatgcagcaagtggtacaagtgggccggtcacattgtttgttgaaatactgaac
aagtacctgtacttttttgagaaaggaaacccacaggttaccagtgctgcaatccagggg
ctggtagaattaatcactaatgagatgcagagtgactccaccacaccagatccagcatca
gatgccttctttgccagcacaatccggtacattcagttccagaaacaaaagggaggtgtc
gtgggtgagaaatttgggcctatcaaggtgtaa
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