Populus nigra (Lombardy poplar): 133694155
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Entry
133694155 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133694155
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03013
Nucleocytoplasmic transport
pnz03015
mRNA surveillance pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133694155
09122 Translation
03013 Nucleocytoplasmic transport
133694155
03015 mRNA surveillance pathway
133694155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133694155
03041 Spliceosome [BR:
pnz03041
]
133694155
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133694155
Spliceosome [BR:
pnz03041
]
Complex C
Other components
EJC/TREX
133694155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
YabA
Motif
Other DBs
NCBI-GeneID:
133694155
NCBI-ProteinID:
XP_061971598
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All DBs
Position
5:complement(18431870..18436841)
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AA seq
775 aa
AA seq
DB search
MSSQYPVLGNKLDLVQWKVTELKEELRRRKLKTSGLKDDLIKRLEEAIRIEREDKEIRHE
LANAAEVAEDVDNGVDLENPHVVGVKNSEAVSAVTETVEVVVDDAANRNEKVDDVMVQVG
IDETVKDMGPRELQEEVKMGGVNSSRIEEEELTVHATTMETSISVTESVVSEVALSVQDL
QNSGTQEANENSSIQLENEDSKPQLENESSKPPDENVVLESSAPDNQVSEVNPNLGFQVK
SDSISTDSVSINEKIELKDNIIADDVKLELDDVKLEMVEPSSSNVVPVGGESHPMDVEEP
QEKSPSVEKKDDSNGTNADMSKKNYSVDVGYSEKLNLDRSSGDDSMEEDVLESKQIDSKY
NTDEVGDECKIKNELPSLKEENLVNVTGKDLSTDQKEIHVENMTCPVAPMEKRKLNDQEA
VGNTEPLKRQRRWNSESIKVPEQQSSNLTPTTTPNDGFQPTPLRRNFSRSDSSVSEEAPK
ERIVPPSQKPPTNSLRIDRFLRPFTLKAVQELLGKTGSVTSFWMDHIKTHCYVMYSSVEE
AVETRNTVYNLQWPPNGGRLLVAEFVDPQEVKIRVDAPPQSPAAPVTPSMPAPAPAPPML
QPQPSPRQQVSRQQLPPPPSLPLQPPLSNPPHARERVDLPPPPPLPEKHDPPIVTLDDLF
RKTKTAPRIYYLPLSEEQVAAKLAGHGKNTKQSAGVACRKELFQPSRGMWFVAGFGFSED
CMMLKKLKFFLALETCQLRALYMSGSPDMWTYLVFLLNKNFNFPNLKQLVLNSLH
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcacaatacccagttcttggaaataaactggacttagtccagtggaaggttact
gagttaaaagaagagcttagaaggcggaaattaaaaaccagtggtttgaaggatgatttg
attaaacggttggaagaagctattcgtattgagagggaagacaaagaaattcgccatgag
ttggcaaatgctgcagaggttgcggaggatgtggataatggtgttgatttggagaacccg
catgtagttggggtgaaaaattcagaggcagtatcagctgttactgagacggttgaagtt
gttgtggatgatgctgctaacagaaatgagaaggtggatgatgttatggttcaggttggc
attgatgagactgtgaaagacatgggtccaagagaacttcaagaggaggtcaaaatgggt
ggtgttaattcttctaggatagaagaagaggagctcactgttcatgcaactaccatggag
accagcatttctgttactgagagtgtggtatctgaagtagcattgagtgtgcaagatttg
caaaattctggaacacaggaggcaaatgagaactcaagtatccagctggagaatgaagat
tcaaagccccagctggagaatgagagttcaaagcctccagacgagaatgtcgtgcttgag
tcttctgctccggacaaccaggtatctgaggtcaaccctaatttagggtttcaagtaaaa
tctgattctatttctactgattctgtatcaattaatgaaaagattgaactaaaggataat
ataattgctgatgatgtcaaattagaactagatgatgttaagctagagatggtggaacca
tcatccagtaatgttgtcccagttggtggtgaatcacatccaatggatgttgaagagcca
caagaaaagagtccctctgttgaaaagaaagatgacagcaatggtacaaatgcagatatg
agcaagaaaaattacagtgttgatgtggggtactcggagaagttgaatttagacaggagt
tctggtgatgactccatggaggaagatgttctagagagtaagcaaattgattcaaagtat
aatactgatgaagtgggcgatgagtgtaaaataaaaaatgaactgcccagtctgaaggag
gaaaatctagttaatgttactgggaaggatttatctactgatcaaaaggagatccatgtt
gagaatatgacttgtccagttgctcccatggaaaaaagaaagcttaatgatcaagaagct
gttggaaacacagaacctttaaagcggcagcgaagatggaattctgagagcatcaaggtt
cctgaacagcaaagctctaatcttacacccaccaccacaccaaatgacgggtttcaacca
actcctttgcgacgcaacttttctcgatctgactcctctgttagtgaggaggcacccaag
gagcgcatcgttccaccatcacaaaaacctcctaccaattctctcagaatcgatcgtttt
ctgcgtccttttactctgaaagctgtccaagaactcctgggaaaaaccgggagtgtcacc
agtttttggatggatcatatcaaaacccattgctatgttatgtattcgtctgtggaagaa
gctgtggagacacgaaatactgtttataacctccaatggccaccaaatggtggacgtctt
ttagtggccgagtttgttgatcctcaggaagttaaaatccgggtggatgctcctcctcag
tctccagctgcacctgtcactcctagtatgcctgcacctgcacctgccccacccatgttg
cagccacagccctctccccgtcaacaggtttctaggcagcagcttccacctccaccttcc
cttccacttcaaccgccgctgtctaacccaccccatgccagggaacgggtcgatcttcct
ccaccccctccacttcctgagaaacatgatcctccaattgtcaccctggatgacctcttt
cggaaaaccaaaacagctcctcggatctactatttaccgttatcagaagagcaagtcgca
gcaaaacttgcaggacatggcaaaaacaccaagcagtctgcaggtgttgcttgtaggaag
gaattgttccagccaagcagaggaatgtggttcgttgctggatttggtttttctgaagac
tgcatgatgttgaagaagcttaagttttttttagcattagaaacttgtcaactaagagct
ctctatatgagtggatcgcccgacatgtggacatatcttgttttcctgttgaacaagaat
tttaactttcccaatcttaaacagttggttctaaattccttgcattga
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