Populus nigra (Lombardy poplar): 133694169
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Entry
133694169 CDS
T10372
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03440
Homologous recombination
pnz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133694169
03460 Fanconi anemia pathway
133694169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnz03032
]
133694169
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133694169
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
133694169
DNA replication proteins [BR:
pnz03032
]
Eukaryotic type
DNA Topoisomerases
133694169
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
133694169
FA (Fanconi anemia) pathway
133694169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
133694169
NCBI-ProteinID:
XP_061971615
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All DBs
Position
5:19530874..19544520
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AA seq
918 aa
AA seq
DB search
MIKVLNVAEKPSVAKSVATILSRNQLRVRDGRSRYNKIFEFNYSINGQQCHMLVTSVTGH
LMEVEFEDRFRKWHSCDPADLYTAPVRKYVPEDKLDIKRTLEEEARRCHWLVLWLDCDRE
GENIAFEVMEVCKGVNRNLTIRRARFSALIERDIHEAAQNLIAPNQWFSDAVDARQEIDL
RIGASFTRFQTMLLRDRFVIDSAQDDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFW
TINCTHRSDEGLASFSWMRGHLFDYTSSVILYEMCVDEPTATVTKVQQQEKLKYPPYPLS
TIELEKRASRYFRMSSEQTMKVAEDLYQAGFISYPRTETDSFSSRTDLHTIVQEHQEHPV
WGSYAQRLLDPGAGLWRNPSNGGHDDKAHPPIHPTKFSAGESRWSQDHHRLYELVVRHFL
ACVSQPAVGAETVVEIDIAGERFSASGRVILAKNYLDVYRFESWGDSMIPTYVQGQQFIP
ATLTLDSGVTRPPPLLSEADLLSCMDKAGIGTDATMHDHIKKLLDRFYVTKDANTRFSPT
NLGEALVMGYDDMGYELWKPNLRSLMEYNMKEVSVGNKSKAEVLATCLQQMKACFLDAKV
NKVKLLEAMSIFFNRSDRSNGDDNSAMGENVRPCGLCQEANMVLKKNRDGNFMVGCSGFP
QCRNAVWLPGPVLEATITNNICNSCTPGPVYLIQFKFRQLEIPPGFNVNHLGCIGGCDET
LRQLIEICGTGSRVQARGRPPTTTPSNGPPTTTPSNPQRSNSRQAPCIYCYQTGHASTDC
PSRISATRHVQSHGMNQQNGESSIPCSTCGTPCVLRTANTANNRGRKFYSCSSQACNFFV
WEDNLNNGSAPRSAPRPNMSNSASNPSRRGGRGRGVQNAGRAADVTFVSATGEPISGRRC
FVCGDPSHFANACPSRGS
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagttctgaacgtggcggagaagccttctgtggcgaaatcggtggcgacgata
ctctcacgaaatcagcttcgagtgagagacggacggtcccggtacaacaagatattcgag
ttcaactactccatcaatggccaacaatgccacatgcttgtcacttccgtcactggtcat
ctcatggaagtcgaattcgaagatagattccgtaaatggcattcttgtgaccccgccgat
ctctacaccgctcccgtccgcaaatacgtccctgaggataagttggacatcaaaaggaca
ttggaggaggaagcgaggaggtgtcattggcttgttttgtggttagattgtgatagagaa
ggagagaacattgcatttgaagtgatggaagtttgtaaaggtgtaaatagaaatcttaca
ataaggagggctcggttttcggctctaattgagagggatattcatgaagcagcccaaaat
cttattgctcctaatcagtggttttcagatgcagtggatgctaggcaagaaattgatctc
cgaataggtgcttctttcactaggtttcaaacgatgttgttgagggataggtttgttatt
gattctgctcaagatgatagaaatcttgttctaagttatgggccttgtcagttccctacc
cttggatttgttgtggaacgttactgggagatacaatcacatgagccagaagagttttgg
actatcaattgtactcatagatcagatgaaggccttgcttctttcagttggatgcgtgga
catctttttgattacacctcatctgttatactttatgaaatgtgtgttgatgaaccaact
gcaacagtcacgaaggtccagcagcaggagaagttgaagtatcccccatatcctttgagt
acgattgagcttgaaaaacgtgcttcacggtacttccggatgagttctgaacaaaccatg
aaggtggcagaagacttgtaccaagctggtttcattagttatcctcgtacagagactgac
agcttttcttccaggactgatttgcatacaattgtacaagaacatcaagagcatcctgta
tggggatcgtatgcacaaagattgttagatcctggagcaggactttggaggaaccctagt
aatggtggacatgatgacaaggcccacccacccatccacccaacaaaattttcagctgga
gaatcccggtggagtcaagatcaccatagattgtatgagctggttgttcgacattttctg
gcatgtgtctcacagccagctgttggggctgaaactgttgttgaaattgatattgctggc
gaacgtttttctgcatcagggagagtgatattagctaaaaattacttggatgtttatcgc
tttgaatcatggggtgattcaatgattccaacctatgtccagggacaacagttcattccg
gcaacattgactttggactctggagtcactagaccgccgcctctcttaagtgaagcggat
ttgttaagttgtatggacaaggccgggattggtacagatgcaacaatgcatgatcacatt
aaaaagctgcttgatcgattctacgtcacaaaggatgcaaacactcgcttctcacctact
aatcttggcgaggcacttgttatgggatatgatgacatggggtatgaactttggaaaccc
aatctgagatcactgatggagtacaatatgaaagaagtcagtgtgggcaataaaagtaaa
gctgaagttttggcaacttgcttgcagcagatgaaagcttgtttcttagatgcaaaggta
aacaaagtaaaactcttggaagccatgtcaattttctttaacagatctgatagatcgaat
ggagatgacaatagtgcgatgggggaaaatgttcggccatgtggactttgccaggaagca
aatatggtgcttaagaaaaaccgggatggcaatttcatggttggatgctcgggttttcca
cagtgcaggaatgctgtatggctccctggacctgttttagaagccaccataaccaacaat
atttgcaactcttgcactccaggtcctgtttacttgatccaatttaagttccgccagctt
gaaataccgccaggcttcaatgtcaaccacttgggttgcattggtggttgtgatgaaact
cttagacagttgatagaaatctgtggaaccggttcccgtgttcaagcaagaggtcgacca
ccaactacaacacccagcaacggaccacccactacaacacccagcaacccccaacgaagt
aactctaggcaggcaccctgcatatattgttatcaaacagggcatgcttcaactgattgc
ccttcacggatttcagccactagacatgtgcagtctcatggaatgaaccaacagaatgga
gaatcttcaattccatgtagcacatgtggaacgccatgtgttctgcgaacagctaacaca
gcaaataacaggggaagaaagttctattcatgttcatcacaagcatgcaacttctttgta
tgggaggataacctcaacaacggctctgccccaagaagtgctcctcgtccaaatatgagt
aactcggcatctaaccctagcaggaggggcggtcgtgggaggggtgttcagaatgcagga
cgtgcagctgatgtaacttttgtatcagctacaggtgagccgatatctggaagaagatgc
ttcgtgtgtggtgatccatcacacttcgcaaatgcttgccccagtcgtggttcctga
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