Populus nigra (Lombardy poplar): 133694514
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Entry
133694514 CDS
T10372
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03440
Homologous recombination
Brite
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
133694514
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
133694514
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
133694514
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
133694514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133694514
NCBI-ProteinID:
XP_061972039
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Position
1:13058241..13064055
Genome browser
AA seq
1029 aa
AA seq
DB search
MIRSAVSECSSQYQISIQRERRASYKMGDPTHLEKMGRELKCPICLSLLDTAVSLTCNHV
FCNSCIVKSMKSGSDCPVCKVPYRRREVRAAPHMDNLVSIYKSMEIASGFNIFVTQNPPP
STKLSDVQKQVGDDTDCGREDIGWICHDMLEEQLNKSRQKDSRKLDESNMELCGPITSKP
SFPTKKRVQVPQCPLSGTSAQPEKLQTGSREIKKDDFKNDSSVSKKNPVVDEKGERMLSP
FFWLRDEDGEKSSQHTDVDQLLDITPPNVPTFSDIKDSDDENPHESSSKGAVCGNESHVA
DFFDSEMFEWTQRACSPEIFSSPAKMQAEKTTEMDGIRESKSETPPLDANKNEERSDESK
NCTDTKPRMGICEDILANLSSPIVKSANYQIGRNTSNKRGRNAKDTTLRNCARKNADKGG
RLKGENVSSVSVRENLDQADENTVTDQLPISFDKKQGRSNLKRKKNGKVSRKINLRCKGR
KLDSVEINMIKEVHSIHNQMDKDEHAHDYFLPVPLVEDKKPSEIKGKPGKQGEEVKSALC
PEHNQDLKCKKKMEVSLDGIIEDGLVGDHQEGADNVFAEEAQSTENITGNSARATESAEK
VQASLNTRILDDLATLRDHCQENGAAMLNCKLNYNIQCAFCLSSEVSEASGEMIHYNNGI
PVAADYNGRSRVIHSHKNCAEWAPNVYFEGDNAINLEAELARSRRIKCCCCGLKGAALGC
YEKSCRKSFHVPCAKLTHQCRWDTENFVILCPLHASCKLPNESKQSQERRKNCISKGQTP
RQYNQVTFKHDINMHKSRKSCLTHDKLVLCCSALTVGEKEIVSEFESLSGVTVLKNWDSS
VTHVIASTDENGTCRRTLKVLMGILKGKWIVNIEWVKACINAMKLVEEMRYEITADVHGI
RDGPRNGRLRVLNKQPNIFEGFKFYFMGDFIPSYKGYIQDLLVTGGGTILHRKPISGAQG
TLLPDSKPPTFIIYSLEMPDKCDPSKKNMILNRRQSDAEALASSTGAKAVSNKWVLNSIA
ACKLQSLAQ
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgataaggagcgccgtcagtgagtgttcttctcagtatcaaatttcaatccagagagaa
aggcgagcgagttacaaaatgggagatccaactcacctcgagaaaatgggcagagagctc
aagtgccccatctgcttaagtcttcttgacactgcagtatcgcttacatgcaatcatgtt
ttctgcaattcatgtattgtgaaatcaatgaaatcaggttccgattgtccagtctgtaaa
gtgccataccggcgtagagaggttcgcgctgctcctcatatggataacttggtcagcatt
tacaaaagcatggaaatcgcttcaggattcaatatattcgtcactcagaatccaccacca
tcaactaaattatcagatgtacaaaagcaagtaggagacgatacggactgtggcagagaa
gatattggttggatttgtcacgatatgttagaggagcaacttaataaatccagacaaaaa
gattcaaggaaacttgatgaatccaacatggaattatgtggtcccattacttcgaaacct
tcgtttccaaccaagaaaagagttcaggtgccacaatgccctctttcaggcacatcggca
caacctgagaagctacaaactggatcaagagaaataaaaaaggatgactttaaaaatgat
tcatcagtctcaaagaagaaccctgttgtcgatgaaaagggagagcgcatgctatcgcct
ttcttctggttgagagatgaagatggagagaagtcaagtcagcacactgatgtggatcag
cttctggatatcacaccaccaaatgttcctactttcagtgatatcaaagactcagatgac
gaaaacccccatgaatcatcctcgaaaggggcagtgtgtggcaacgaatcacatgttgcc
gatttttttgacagtgagatgtttgaatggacgcaacgagcttgctctcctgagattttt
tcaagcccagcaaagatgcaggctgaaaaaacaacggaaatggatggaattcgagaaagt
aagtcagaaacacccccactggatgcaaataaaaatgaagaacgtagtgatgaaagcaaa
aactgtactgataccaaaccgcgaatgggtatttgtgaagacatactggccaatctatcc
tctccaatagttaaaagtgcaaattaccaaatcgggcgtaatacttccaataagagaggc
aggaatgccaaggacacaacattaaggaattgtgctcggaagaatgcagataagggtggt
aggttgaaaggagagaatgtttcttctgtttcagttagagaaaatttggaccaggctgat
gaaaacacggttactgatcagctgcctatttcatttgataagaaacaaggtcgcagtaat
cttaaaaggaagaagaatggaaaagtgagtagaaagatcaatctccggtgcaagggacga
aagctggattctgttgagataaacatgattaaagaagtccattcaatacacaaccaaatg
gacaaagatgaacatgcccatgattactttttacctgtccctctggttgaagataaaaaa
ccctcagaaatcaaggggaaacctggcaaacaaggggaagaagtcaagtctgcattgtgt
ccagaacataatcaagacttaaaatgtaagaaaaaaatggaagtttcattagatggtatc
atagaagatggattagtcggtgaccatcaagaaggtgctgacaatgtctttgcagaggaa
gctcagtccactgaaaatattactggaaactctgcaagggcaactgaatctgctgagaag
gttcaagccagtcttaatactcgaattcttgatgatttggcaacattaagggatcattgc
caagaaaatggagcggccatgcttaactgcaagcttaattataatattcaatgtgctttc
tgtctttcttcagaagtctcagaggcttcaggagagatgatccactacaacaatggcata
cctgtggcggcagattataatggtagatccagggtcatacactctcataaaaactgtgct
gagtgggcacctaatgtctacttcgagggtgataatgcaattaaccttgaagctgaatta
gctagaagtcggagaattaagtgttgctgctgtggactcaaaggtgctgctcttggatgt
tacgagaagagttgtcgcaagagtttccatgttccttgcgcaaagttgacccaccaatgt
cgatgggatactgaaaactttgttatcttatgccctcttcatgcttcttgtaagttgcct
aatgaaagcaaacaatctcaagagaggagaaaaaactgcatttcaaaaggacaaacacca
aggcaatacaatcaagttactttcaaacatgacatcaatatgcataaaagtcggaaatca
tgtttaacacatgacaagttggttctttgctgttcggctctcacagttggagaaaaggaa
attgtttctgagtttgagagtttatctggagttacagtcttgaagaattgggattcaagt
gtcactcatgtcattgcatcaacagatgaaaatggaacatgcagaagaacccttaaagtt
ttgatgggtatcttgaaggggaagtggatagtgaacattgaatgggtcaaggcttgtatc
aacgccatgaaacttgttgaagagatgcgatatgaaattactgctgatgttcacggaatc
agggatggtccacgaaatggaagactaagagtcctgaacaagcaaccaaacatttttgag
ggatttaagttctatttcatgggagattttatcccttcttacaagggatatatacaagat
cttttagttactggtggaggaacaattctgcacagaaaacccatttcgggagcccaggga
accttgttaccagactctaaacctccaactttcataatatacagcctcgagatgcctgat
aaatgtgatcctagcaagaagaatatgatattaaaccgaaggcagtctgatgcagaagct
ctagctagttcaactggagcgaaagcggtaagcaataaatgggttttaaactctattgca
gcctgcaaattacaaagtttggctcaataa
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