Populus nigra (Lombardy poplar): 133694630
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Entry
133694630 CDS
T10372
Name
(RefSeq) vacuolar sorting protein 39-like isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04148
Efferocytosis
Brite
Membrane trafficking [BR:
pnz04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
133694630
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GFIT
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NCBI-GeneID:
133694630
NCBI-ProteinID:
XP_061972218
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Position
5:14642460..14650079
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AA seq
1008 aa
AA seq
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MVHNAYDSFELLTNCPDKIDAIESYGSKLLIACSDGALRIYAPVSTISDKSPPSDYHNHG
DQLRKEPYSLERTVNGFSKKPILSMKVLASRELLLSLSETIAFHRLPNLETIAVLTKAKG
ANVFDWDDKRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVSDTVKSMSWCGENICLGIRK
EYWILNSTNGALSQVFPSGRLAPPLVVSLPSGELLLGKDNIGVFVDQNGKHLQAEKICWS
EAPSLVVIQKSYAISLLPRRIEIRSLRVPYSLIQAFVLQNVRHLIESNNAIIVALSNSVC
ALFPVPLGAQIVQLTASGNFEEALALCKLLPPEDSNLRAAKEGSIHIRYAHYLFDNGSYE
EAMEHFLASQVDIIYVLSLYPSIVLPKTSLVPEPEKLIDISQDAPYLSRGSCGLSDVMEP
SPPIHLSDFDEHSALESKKMSHNTLMALIKYLQKRRFGIVEKATAEGTNEVVSDAVGDNY
GPYESNRFKKSNKGRGNIAINSGAREMAAILDTALLQALLLTGQTSAALELLKGLNYCDL
KICEEILQKWNHYTALLELYKCNAMHREALKLLHQLVEESKSNQSKPELNPKFKPESIVE
YLKPLCWTDPMLVLEFSMLVLESCPTQTIELLLSGNIPADLVNSYLKQHAPSMQGRYLEL
MLAMNENGISGNLQNEMVQIYLSEVLDWHAELNGQEKWDDKAYSPTRNKLLSALESISGY
NPEALLKRLPADALYEERALLLGKMNQHELALSLYVHKLHVPDLALSYCDRVYESAAHLP
SAKSSGNIYLTLLQIYLNPRKTTMNFEKRITNLVSFQNTNVPKVSSVTAVKAKGGRATKK
IAAIEGAEDLRVSPSGTDNSRSDGDTDEFGDEGGSTIMLDEVLDLLSKRWDRINGAQALK
LLPRETKLQNLLPFLGPLLKKSSEAYRNLSVIKSLRQSENLQVRDEMYNRRKTVVKITSD
TTCSLCKKKIGTSVFAVYPSGNTIVHFVCFKDSQSIKAVAKGSALRKR
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggtacacaatgcctacgattccttcgagctcctcacaaattgcccagacaaaattgat
gcaatcgaatcctacggttcaaagctcctcatcgcttgctccgatggagctctcagaatc
tacgctccagtgtcaactatctccgacaaatctccaccgtctgattaccataaccacggt
gatcaacttcgaaaggagccgtattcactggagagaacggtaaacggattctctaaaaag
ccgattttgtcaatgaaagtattggcttcaagagaactgctcctatcgctctctgaaact
atcgcgtttcatcgattgccaaatttggagaccattgcggtgcttactaaagctaaaggt
gctaacgtgtttgattgggatgataagcgagggtttctgtgcttcgccaggcaaaagaga
gtctgcatttttagacatgacggtggaaggggatttgtggaggtgaaagattttggagtt
tcagatacagtgaagtcaatgtcatggtgtggtgagaacatatgtttgggaattagaaag
gaatattggatattaaattcaacaaatggtgcattgagtcaggtttttccttcagggaga
ctagctcctccattagtggtatctcttccttctggggagcttcttcttgggaaggataac
attggagtctttgtggaccaaaatggcaagcatctccaagcagagaaaatttgttggtca
gaggctccatctcttgttgtcattcaaaagtcctatgcaatttctctgcttccaagacgg
attgagattcggtctctccgagttccatactcattgatacaagcttttgttcttcaaaat
gttcgccatcttattgaaagcaacaacgcgataattgttgcattaagcaattctgtctgt
gcgctgttccctgttcctcttggtgcacagattgtacagttgacagcatctggaaatttt
gaggaagccttggccttgtgcaaactgcttccaccagaagattcaaaccttcgagctgct
aaggagggttcaattcacataagatatgcgcattatctttttgataatgggagctatgag
gaggctatggaacatttcttagcatctcaagtagatatcatctatgtgctttctttgtac
ccatccattgttctccccaaaacatctttggttccagaacccgagaaactaattgacatt
tctcaagatgctccgtatctctcaagaggttcctgtggattgtctgatgttatggaaccc
tcacctccaatccacctatcagattttgatgagcattcggcactagagtccaagaagatg
agccataatactctcatggctttgatcaagtacttgcagaaaagaagatttggcatagtt
gaaaaggccactgctgagggaacaaatgaggttgtttcagatgctgttggagataattat
ggaccttatgaatctaataggtttaagaaatccaacaagggtcgtggtaacattgccatt
aactcaggtgccagggaaatggcagcaatattggacacggctcttcttcaagctcttctt
cttacaggacagacttcagcagctttagaattattgaagggtcttaactactgtgaccta
aaaatatgcgaggagattcttcaaaaatggaatcattatactgctttattagaactctac
aagtgcaacgccatgcaccgtgaagctcttaaacttctgcatcaattagttgaagagtca
aaatcaaaccagtcaaagcccgagctaaacccaaaattcaagcctgaatctattgttgaa
tatctcaagcctctgtgttggactgatcccatgcttgtcttggagttttcaatgcttgtt
ctcgaaagctgtcccacacaaactattgagctacttttgtctgggaatattcctgcagac
ttggtcaactcttatctgaagcagcatgctccaagcatgcaaggcagatatttagaactg
atgcttgcgatgaatgaaaatgggatctctggaaacctacaaaatgaaatggtgcaaatc
tatctctcggaagtgcttgattggcatgccgagttgaatggtcaagaaaaatgggatgat
aaggcttattcaccaacacggaataaattattgtctgctttggagagcatctcagggtat
aacccagaggctttgttgaaacggcttccagcagatgcattatatgaagagcgggcactt
ttgttgggaaaaatgaaccaacatgagcttgccttatctctgtatgttcacaagcttcat
gttcctgatctggcattatcctactgtgaccgtgtctacgagtctgcagctcatctacca
tctgcaaaatcttctggcaatatatacctaactctcttgcaaatttacctcaaccccagg
aagacaaccatgaattttgaaaagcgaataacaaatctagtatcctttcagaatactaac
gttcccaaggtaagttctgtgaccgcagtaaaagctaaaggaggtcgtgctacaaagaaa
attgctgctatagagggtgcagaagacttacgagtcagtcccagtggcactgacaatagc
aggagtgatggtgatacagatgaatttggtgatgaagggggttctactattatgcttgat
gaggtcctcgatctgttgagcaaaaggtgggacagaatcaatggagctcaggccctcaaa
ctcttaccaagggaaactaaattacagaatttgcttccctttcttggacctcttctaaaa
aaatccagtgaagcatacaggaatctctcagtaatcaaaagcttgaggcagagtgagaat
ctgcaggtgagagatgaaatgtacaaccgtaggaaaacagttgtcaagatcaccagtgat
actacctgctctctttgcaagaagaaaattggaacgagcgtttttgcagtctaccccagt
gggaacacaatcgttcacttcgtttgcttcaaagattcacaaagtataaaagctgtggcc
aaaggatcggctctaaggaagcgatga
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