KEGG   Populus nigra (Lombardy poplar): 133694638
Entry
133694638         CDS       T10372                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03018  RNA degradation
pnz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133694638
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133694638
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pnz03019]
    133694638
   03041 Spliceosome [BR:pnz03041]
    133694638
Messenger RNA biogenesis [BR:pnz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     133694638
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     133694638
Spliceosome [BR:pnz03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    133694638
SSDB
Motif
Pfam: LSM RVT_2
Other DBs
NCBI-GeneID: 133694638
NCBI-ProteinID: XP_061972237
LinkDB
Position
1:21415104..21417759
AA seq 98 aa
MSIGTGLESLVDQTISIITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNIGVVGELDEELDAHLDLSSLRAHPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtctattggaacaggactcgagtctctcgtagatcaaacaatttcaattatcacaaat
gatggccggaatatagtgggagtcttaaaaggctttgaccaggccacaaatattatcctt
gatgaatctcacgagcgtgtttactccaccaaggaaggtgttcaacaactagtgttgggc
ttgtacataataaggggtgacaacataggcgttgttggggaacttgatgaagagcttgat
gcgcaccttgacttgtctagtctgagagctcatccactcaagcctgtcattcattga

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