Populus nigra (Lombardy poplar): 133694638
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Entry
133694638 CDS
T10372
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133694638
09123 Folding, sorting and degradation
03018 RNA degradation
133694638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133694638
03041 Spliceosome [BR:
pnz03041
]
133694638
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133694638
mRNA degradation factors
5'-3' decay
Lsm complex
133694638
Spliceosome [BR:
pnz03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133694638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
RVT_2
Motif
Other DBs
NCBI-GeneID:
133694638
NCBI-ProteinID:
XP_061972237
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All DBs
Position
1:21415104..21417759
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AA seq
98 aa
AA seq
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MSIGTGLESLVDQTISIITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNIGVVGELDEELDAHLDLSSLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtctattggaacaggactcgagtctctcgtagatcaaacaatttcaattatcacaaat
gatggccggaatatagtgggagtcttaaaaggctttgaccaggccacaaatattatcctt
gatgaatctcacgagcgtgtttactccaccaaggaaggtgttcaacaactagtgttgggc
ttgtacataataaggggtgacaacataggcgttgttggggaacttgatgaagagcttgat
gcgcaccttgacttgtctagtctgagagctcatccactcaagcctgtcattcattga
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