Populus nigra (Lombardy poplar): 133694690
Help
Entry
133694690 CDS
T10372
Name
(RefSeq) probable splicing factor 3A subunit 1
KO
K12825
splicing factor 3A subunit 1
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
Spliceosome [BR:
pnz03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
133694690
Complex B
133694690
Complex C
U2 SnRNP specific factors
133694690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP21_like_P
Surp
ubiquitin
Motif
Other DBs
NCBI-GeneID:
133694690
NCBI-ProteinID:
XP_061972322
LinkDB
All DBs
Position
5:complement(17225494..17229652)
Genome browser
AA seq
805 aa
AA seq
DB search
MSSTAILPLPAPPVNGDGSPPPPSQVVEQQPREDRTESEEQSRAPVATHTRTIGIIHPPP
DIRSIVDKTSQFVAKNGPEFEKRIIANNANNAKFNFLNSSDPYHAYYQHRLAEFRAQNQA
PGQQPTSQPADSAAPDSAPKPDSAADENEAAPKPDPSAQFRLPPPKVLEPPEAEQYTVRL
PEGITGEELDIIKLTAQFVARNGQAFLTGLTNREMNNPQFHFLKPTHSMFTFFTGLADAY
SKVLMPPKGLTEKLTKSVSDMTTVLERGLHRLEWERSQEQARQKAEDEIEQERMQMAMID
WHDFVVVETIDFADDEDEDLPPPMTLEEVIRRSKISAMDEDEIIEPGKEVEMEMDEEEMQ
LVEEGMRVASIEENDGEKGARTNEEQEPPMRIVKNWKRPEERIPAERDPTKFVVSPITGE
LIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARLRPDIFGTT
EEEVSNAVKAEIEKKKDEQPKQVIWDGHTGSIGRTANQAMSQNANGEDQNEAVNNDVRNL
PGPAAPPPRPGMLTVRPLPPPPGLQLNLPRAPPNTVQYSGPTAGAYLVHPQRPVSIPIMQ
PNYPPPMQMAPGQQHIMVNRPPPMPPSMSGNPSLPVPPPPGSEYNSMAVPRPFAPHPVSQ
PGLHMMPPPPPLPQGMPPPPPPEDAPPPLPDEPEPKRQRLDDSALVPEDQFLAQHPGLVR
VTVAVPNIDEGNLKGQVLEITMQSLSETVGSLKEKIAGEIQLPANKQKLSGKAGFLKDNM
SLAYYNVGPGELLALSLRERGGRKR
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccacagcaatcttaccgcttccagcacctcctgttaatggagatgggtctcct
cctccaccctcgcaagtggtagaacagcagccgagggaggatagaacggaaagtgaggag
cagagcagagcaccagttgcgacccatacgagaactattggaattattcatcctccacct
gatattagaagtattgttgataagacctcgcaatttgtggcaaaaaatggacctgagttt
gagaagaggattattgcaaacaatgctaataatgccaagttcaattttttaaattcgtcg
gatccgtaccatgcttattaccagcatcgtttggcagaatttcgtgctcagaatcaagct
cctggacagcagcctacttcacagcctgcggattcagctgctcctgattcagctccgaaa
cctgattcagctgctgatgaaaatgaagcagctccgaaaccggatccttcagcccagttt
agattacctcctcctaaggttcttgaacccccagaagctgagcagtatactgttcggctt
ccagaagggattactggagaggaacttgatattattaagctcacagctcagtttgtagct
cgaaatgggcaagctttcttgactggattgacgaatagggagatgaacaatcctcagttc
cactttttgaagccaacccatagcatgttcaccttttttactggacttgctgatgcatat
tctaaagttttgatgcctccaaagggtttgactgagaagttgacaaagagtgtttctgac
atgaccactgtgcttgaaaggggcttgcatcggcttgaatgggaacgctcacaggagcag
gcaagacagaaagctgaggatgagattgaacaggagcggatgcaaatggcaatgattgat
tggcatgattttgttgtggttgagactatagactttgcagatgatgaagacgaggacttg
ccccctccaatgacacttgaggaagttataaggaggagcaagatatctgctatggatgaa
gatgaaatcattgagcctggaaaggaggtggaaatggaaatggatgaagaagagatgcag
cttgttgaggaaggcatgagggttgcaagtattgaagagaatgatggtgagaagggcgca
agaacaaatgaggaacaagaaccacctatgaggattgtgaagaactggaagagacccgag
gagaggatccctgctgaaagagacccaacaaagtttgttgtttctcctatcactggtgag
ctaattccaattagtgagatgtccgagcacatgagaatttccctcattgatcccaagtac
aaggagcaaaaggaaaggatgtttgccaagattcgggaaactactcttgcacaggatgat
gagatctctcgtaacatagtgggactggcacgcttgaggcctgatatctttggcaccaca
gaggaagaagtttctaatgcagtgaaggctgaaattgagaagaagaaagatgagcagcca
aagcaggtcatatgggatggtcacactggtagtattgggcgcactgcaaaccaagctatg
tctcagaatgctaatggcgaggatcaaaatgaagctgttaacaatgatgtaaggaacctt
cctggtccagcagctcctcctccccgacctggtatgctgactgtccgtcccctccctcca
ccaccaggactgcagttgaatcttcctcgtgcacctccaaatacagttcaatattctggt
cccactgctggggcatatcttgtacatccgcaaaggccagtcagtattccaattatgcag
ccaaattacccccctccaatgcaaatggcacccggacagcaacacattatggtaaatcga
cccccccccatgcctccatcaatgtctggcaatccaagtttacctgtgccgcctccacct
ggatcggaatataattccatggcagttcctcgaccttttgcccctcatcctgtctcccaa
cctggattgcatatgatgccaccaccacctccgttgcctcaaggaatgcctccaccaccc
ccacctgaggatgctcctcctccacttccagatgagccagagccgaaaaggcagaggctt
gatgactctgcgcttgttcctgaagatcagtttctggctcaacatccgggacttgtgcgc
gtcactgttgctgttcccaatattgatgaaggaaatctcaaaggccaagttctggagatt
acaatgcagtccttgtctgaaactgttggcagcctaaaggagaaaattgctggagagatc
caacttcctgcaaacaaacagaaattgagtggaaaagctggttttctcaaggataatatg
tcactggcatattacaatgttggaccaggagaattgctggctctctctttgagagagcgt
ggtggtagaaagagatga
DBGET
integrated database retrieval system
