Populus nigra (Lombardy poplar): 133694823
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Entry
133694823 CDS
T10372
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133694823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133694823
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133694823
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133694823
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
133694823
NCBI-ProteinID:
XP_061972512
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All DBs
Position
1:46264556..46265960
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AA seq
274 aa
AA seq
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MSLLLKGDSILIREVWNDNLEEEFAHIREIVDDFPYIAMDTEFPGIVLRPVGNFKNSNDY
HYQTLKDNVDMLKLIQLGLTFSDEQGNLPTCGTDKYCIWQFNFREFNVNEDVFANDSIEL
LRQSGIDFKKNNENGIDAVRFGELLMSSGIVLNDNVYWVTFHSGYDFGYLLKLLTCQNLP
DTQAGFFNLINMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTA
CTFRKLKENFFSGSLEKYAGVLYGLGVENGQNTH
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgttgctaaaaggtgattctattctaattcgtgaggtgtggaatgacaatctc
gaagaagaattcgcgcatatccgtgaaatagttgatgatttcccttatattgccatggac
acggagtttccgggcattgtgttgcgtccggtgggtaattttaagaatagtaatgactat
cattaccagactttgaaggataatgtggatatgttgaagttgattcaattgggtcttacc
ttctcagatgaacaagggaatttaccaacttgtggcacggataagtattgcatttggcag
tttaatttccgtgagttcaacgtgaacgaggatgtttttgcaaatgattcgattgaactt
ttgcggcagagcgggattgactttaagaagaacaatgaaaacggtattgatgctgtcaga
tttggtgagctcttgatgtcgtctgggattgtgttgaatgataacgtgtactgggtgaca
tttcatagtggttatgattttgggtacttgcttaagctgttgacttgccagaatttaccg
gatacacaagcagggttctttaatttgatcaacatgtactttccaactctttatgatatc
aagcatttgatgaagttttgcaatagtcttcatggagggttgaacaagcttgcagagttg
ttagaagttgaaagagttgggatatgccatcaagcaggttcagatagtttgcttacagct
tgtacattcaggaagttgaaagagaatttctttagcggctccttggaaaagtatgctggt
gtgttgtatggtttaggtgttgagaatggacaaaatacccattga
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