Populus nigra (Lombardy poplar): 133694971
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Entry
133694971 CDS
T10372
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133694971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133694971
03036 Chromosome and associated proteins [BR:
pnz03036
]
133694971
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133694971
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133694971
PBAF complex
133694971
GBAF(ncBAF) complex
133694971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
133694971
NCBI-ProteinID:
XP_061972666
LinkDB
All DBs
Position
5:complement(6237514..6244180)
Genome browser
AA seq
797 aa
AA seq
DB search
MPASPSFPSSDGRGKWKRRKRGDSQITRKPPKHHHQEEPEEPEEEDDAVEADDNNNNVID
REDSDDPNPNQQPSGPDPNPQETEVLIDGGVRLCDFPPVTRLAVNRPHASVMAIVAAERA
CLAGESSNRGQLVVNLENVSYGQLQAVSAVIADCDGSDLERSDGGNTGYVVTPPQIMDGK
GVVKRFWSRVHLVPMHSDWFSPALVNRLERQVVPHFFSGKSPDHTPEKYRECRNRIVAKY
MENPEKRLTVPDCQGLVVGIDNEDFTRIFRFLDHWGIINYCAAPPSCEYWNGGSYLREDP
NGEVHVPSAALKSFDSLIQFDKPKCRLKAADVYSSLSCHDDDLSDLDNRIRECLSENRCN
HCSQLLPSVCYQSQKEQVDILLCPDCFHEGRFVTGHSSLDFIKVDSTKDYGDIDGESWSD
QETLLLLEAMEIYNENWNEIAEHVGSKSKAQCILHFLRLPVEDGLLENIEVPSMPKSISP
SNREDNRRPHSSSNGSCLQGADAENRLPFANSGNPVMALVAFLASAVGPRVAAACAHASL
EALSADNRLGSERLHGREGGFHGEVANSIQLEEDSQHGSRGQNGAEVAPLSAEKVKAAAK
AGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMRECEQVEKT
RQRFAAERIRMLSTRITPAGVASQMNPAGVAPSMVNNNVGNSRQQVMPSSSSQPSISGYG
SSNPAHPHNNQQVHSHMSYMQRGQPQPMFPLGPRVPVAAIQSSSPAPSSVMYNASGNSQP
NLNQMLRSVSGPSSGLG
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttctccttctttcccttcctcagatggtaggggcaaatggaaaaggcgaaag
cgaggagattctcaaattacacgaaaacctccgaagcaccaccaccaagaagaaccagaa
gaacccgaagaagaagacgacgccgttgaggcggacgacaataataacaacgtcatcgac
agagaagattctgatgacccgaacccaaatcaacagcccagcggacccgatccaaaccct
caagagaccgaggttttaattgatggtggggtccgcttatgcgatttccctcctgtcacg
aggctcgctgtgaaccgccctcatgcctccgtgatggcgattgtggcggccgagagggcc
tgcttggctggggaaagcagtaatagagggcaattggtggttaatttggagaatgtatcg
tacgggcagctgcaggcggtgtctgctgtgatagcggactgtgatgggagtgatttggag
aggagtgatggagggaatacagggtatgtagtgacgccgccgcagattatggatggaaag
ggtgtcgtgaagaggttttggagcagagttcatttggttcctatgcattcagattggttt
tcaccggccttggtaaatcgactggagagacaagtggtgccacattttttctctggaaaa
tctccagatcacacaccagagaaatacagggagtgtagaaatcgcattgttgctaaatac
atggagaatccagagaagaggctcacagttccggattgtcaaggattggtagtcggcatt
gacaatgaagattttactcgaatttttagatttcttgatcattggggaattataaactac
tgtgcagctccaccaagttgtgaatattggaatgggggttcttatttaagggaggatcca
aatggtgaggttcatgtgccatcagctgctttaaagtcttttgatagtttgatccaattt
gacaagcccaaatgtaggctcaaggcagctgatgtttactcatcattgtcatgtcatgat
gatgatctctctgacttggacaacagaattcgagagtgcttatctgaaaatcgttgcaat
cattgttctcagcttcttccctctgtgtgctaccagtcacaaaaggagcaggttgatata
ctattatgccctgactgctttcatgaggggagatttgtgactggtcattcaagcttagat
tttattaaggtggattcaacaaaagattatggagatatagatggggaaagttggagtgat
caggaaacattactgctacttgaggcaatggaaatttacaatgagaattggaatgaaatt
gcagagcatgttggctccaagtcaaaagcacaatgcatccttcattttctccgtctgcct
gtggaggatggcctgttggaaaacattgaagttccaagcatgcccaagtcaatcagtcca
tcaaatagagaggataacagaagaccacactcaagttcaaatggatcctgcctccaaggt
gctgatgctgaaaacaggctcccttttgcaaattctggcaatccagttatggcattggtt
gcttttctggcctctgctgttggaccaagagttgctgcagcctgtgctcatgcatctttg
gaagcgctgtctgcagataataggttgggttcagagagactacatggtagagaaggtggt
tttcatggagaagttgcaaattcaattcaactagaagaagatagccaacatggctcacgg
ggtcaaaatggggctgaggttgctcctctgtctgctgaaaaagttaaagctgctgccaaa
gctggccttgctgctgcagcaacaaaagctaaactgtttgccgatcatgaagaacgagaa
attcagaggctatctgctaatataataaatcatcagttgaagagattggagcttaagctg
aagcaatttgcagaagtggaaacctttctaatgagagagtgcgagcaagtggagaagaca
aggcagaggtttgccgctgagcgaatccgcatgctatctacccggataacacctgcagga
gtcgcttcacaaatgaacccagcaggtgttgctccttcgatggttaacaataatgttggc
aacagtaggcagcaggtgatgccttcctcatcttcgcaaccaagcatttcaggatatggc
agcagtaacccagcccatccacacaacaatcaacaagtccattctcacatgtcatatatg
caacggggacagccacaaccaatgtttccactagggccgagggtgcctgtggcagctata
cagtcatcatcaccagctccgtcaagtgtcatgtacaatgcctctggaaattcacagcct
aacctcaatcaaatgctgaggtccgtgtcaggccctagctctggtttaggttga
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