Populus nigra (Lombardy poplar): 133695033
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Entry
133695033 CDS
T10372
Name
(RefSeq) rhamnogalacturonate lyase B-like isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
133695033
Enzymes [BR:
pnz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
133695033
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
133695033
NCBI-ProteinID:
XP_061972760
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Position
5:complement(11182058..11188853)
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AA seq
726 aa
AA seq
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MWKRLHSFAGSLRDFGGCTRHNNGASSSCQNPGGGDLDRGQRASRVNKGGPTMPFQAVRL
YIQDHHVVMDNGIVQVTLSKPAGIVTGIRYDGIDNLLEVLNRETNRGYWDLHWNPPGGNG
IFDVISGTSFRVVVENDEQVELSFTRMWDSSLEGKYIPLNIDKRFILLRGSSGFYSYAIY
EHLQEWPGFDIGETRVTFKLRKDKFQYMAIADNRQRLMPLPDDRLPGRCQALAYPEAVIL
VNPKLPELAGEVDDKYQYSCENKDNQVHGWICFKPPVGFWQITPSDEFRTAGPLKQNLTS
HVGPTTLAMFHSSHYAGKDLVLSISPGEPWKKVFGPVFIYLNSASNGEDPLFLWEDAKMQ
MMAEVQSWPYSFPASEDFQKSEERGNVCGRLLVKDRNISDDYILASGAYVGLAPPGDVGS
WQTECKDYQFWTRADENGYFSIKNIRTGDYNLYAWVPGFLGDYRWDAIVNIISGFLPQTL
LISFEYCFFNDRCYRVQISCNVGCDMDMGDLVYEPPRDGPTLWEIGIPDRSAAEFYIPGP
DPKFMNNLYANHPDRFRQYGLWGRYADLYPDTDLVYTVGLSDYRKDWFFAQVVRRKDDDT
QVGTTWQIKFKLDKVDRNSSYKLRVAIASATLAELQVRVNDAKAQRPLFTSGLIGRDNAI
ARHGIHGLYRLYNVNIPGARLVEGENTIFLTQPRCTSPFQGLMYDYIRLEGPPLSGSSNE
ASSSFK
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaaagattgcacagttttgctggctctctccgtgactttggtggatgcacgcgt
cacaacaacggcgcttcctcctcttgtcaaaatcctggaggtggagatttggatcgtggt
caaagagcttcaagagttaacaagggtggtcccaccatgccatttcaggcagtgcgattg
tatattcaagatcaccatgtggtgatggataatggcatagtacaagttaccttatcgaaa
ccagctggaattgtcaccgggatacgatatgatggcatcgacaatttgcttgaagttctc
aatcgtgaaacaaatagagggtactgggatcttcactggaatccacctggaggcaacgga
atatttgatgtgattagtggaacaagttttagggtcgtagtggaaaatgatgagcaggtt
gagctctcatttacaagaatgtgggattcctcacttgaaggcaaatacattcccttgaat
atagataaaaggtttatattgctacgtggttcgtcaggcttctactcatatgccatttac
gagcacttgcaggaatggcctggttttgatattggcgaaacaagggttacttttaaactc
cggaaagacaagtttcagtacatggctatagctgataacaggcaaagattgatgccctta
ccagatgaccgcttgccaggaagatgtcaagccctggcttatccagaagctgtcattctc
gttaatcccaaactgccagagctcgcaggagaggtggatgacaagtaccaatattcatgt
gaaaacaaagataatcaagtccatgggtggatatgcttcaagcctccagtggggttctgg
caaatcacaccaagtgatgaattccgaactgctgggcccctgaaacagaatctcacttct
catgttggccccaccactcttgctatgtttcatagttcacattatgcgggaaaagatctg
gtactgagtataagccctggtgaaccatggaagaaagtttttggccctgtttttatctat
cttaattctgcatcaaatggagaggaccctctctttctgtgggaagatgctaaaatgcag
atgatggctgaagtccaaagctggccatacagcttccctgcttctgaggatttccaaaag
tcagaagaacgagggaatgtttgtggacgactactagtcaaagacaggaatataagtgat
gactatatactagcaagtggtgcttatgtggggttggccccaccaggagatgttggatca
tggcaaacagaatgcaaggactaccaattctggaccagagcagatgagaatggctatttc
tctattaaaaacatacgcaccggggactacaatctttatgcatgggtccctggatttctt
ggagattacagatgggatgctatcgtgaacataatttctggttttcttcctcaaactcta
ttgatctcttttgagtactgttttttcaatgatagatgttacagagttcaaatatcatgc
aacgtaggttgtgatatggacatgggtgatcttgtgtacgagcctccaagagatgggccc
acactgtgggaaataggcatccctgaccgttccgctgctgagttctatattccaggtcct
gatccaaagtttatgaataatctatatgccaatcatcctgacagatttcggcagtatggt
ttgtggggcagatatgcagatctgtaccctgatacagatttggtttacacagtcggtctc
agtgactacagaaaagactggttctttgctcaggttgtcaggagaaaagacgatgataca
caagtaggaactacatggcaaatcaagttcaaacttgacaaagtggatcggaacagtagc
tacaaactgagagtggcaattgcatctgcaaccctagcagaattgcaggttcgtgttaat
gatgcaaaagcacaacgtccactatttacaagcggattgatagggagggacaacgcaatt
gccagacatgggattcatgggctctaccggctgtataatgtgaatattccaggagctcgg
ctagtcgaaggagagaataccatcttcttgacgcagccaagatgcaccagccctttccag
ggtctcatgtatgactacatacgtctagaaggtcctccgctttctggatccagtaatgaa
gcttccagttcatttaagtaa
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