Populus nigra (Lombardy poplar): 133695044
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Entry
133695044 CDS
T10372
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133695044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133695044
03012 Translation factors [BR:
pnz03012
]
133695044
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133695044
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133695044
Translation factors [BR:
pnz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133695044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
R3H
OB_NTP_bind
DEAD
Helicase_C
HA2_C
Ank_2
ATPase
Ank_5
nSTAND3
HA2_N
AAA_19
AAA_22
ResIII
Ank
Ank_4
Rad17
AAA_23
AAA_7
ABC_tran
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
133695044
NCBI-ProteinID:
XP_061972781
LinkDB
All DBs
Position
5:3835447..3844687
Genome browser
AA seq
1216 aa
AA seq
DB search
MNNQETKAQKGKMGKKNQRKAAQQQNPRVAEATLIRISKILESFRAAPDQVYTFEANLSN
YDRAVVHEVCKKMGMKSKSSGRGGQRRVSVYKNTKKLDDVKGKENLTHLTFSGESKMVLG
ELFSNYPPEEGGFGAEIEGKHSGTAGKTREKKDDIFSKPSRKKAEIAKKVESFASRIEKD
VKLKQIVEGRSKLPIASFMDVITSTIESHQVVLISGETGCGKTTQVPQFLLDHMWGKGEA
CKIVCTQPRRISAISVSERISYERGENVGDSVGYKIRLESKGGKHSSIVFCTNGILLRIL
VSKGITGSQNEANTAAKENVSDLTHIIVDEIHERDRFSDFMLAIIRDILPSHSHLRLILM
SATLDAERFSQYFGGCPIIRVPGFTYPVKAFHLEDVLSILNSRDDNHLDSAMPNVLDEGH
ELTEEDKAALDEAINLAWSNDEFDSLLDLVSSEGTPKVYDYQHSASGLTPLMVFAGKGRV
GDVCMLLSLGANCNLQSKCGLTALKWAERENQEEAAEVIRKHAQNTLADSSEQQQLLDKY
MATINPELIDVVLIEQLLKKICVDSKDGAILVFLPGWDDINRTRERLLANPFFKDGSKFI
IISLHSMVPSVEQKKVFKRPPQGCRKIILSTNISESAITIDDVVYVIDSGRMKEKSYDPY
NNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRESSLPDFQVPEIKRMPIEELC
LQVKLLDPHCKIEAFLQKTLDPPVPETIRNAVAVLVDIGALSVDETLTELGEKIGCLPVH
PLTSKMIFFAILMNCLDPALTLACASDYRDPFTLPMLPNEKKRAAAAKFELASLYGGHSD
QLAVLAAFECWNNAKNRGQEAWFCSQYFISSSTMNMLQAMRKQLQRELIRKGFIPENVSS
CNTNAHVPGIVHAVLVAGLYPMVGRFLPPKNGKRVVETTSGAKVRLHPQSLNFKLSFWKS
NDYPLVIYDEITRGDGGMNIRNCTVIGPLPLLLLATEIVVAPAENDDEDDEEDDDDYDSA
DGAESDEDGMEIHGKLGTQQGERIMSSPDNSVMVVVDRWLYFGATALDVAQIYCLREQLS
AAILFKVTHPHKELPPALAAYTYTTACILSNDGLSGISLPGESVESLTSMVHATEIDESC
SGRRGISQNPNSFLSSLKNNTQQTAPRYHNARSPNQRPTLQGSTSAGHNMQGPSGPRGDS
YKRQRGNATRQHVRYL
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatcaagaaaccaaagcacagaaagggaaaatgggtaagaagaaccagaggaaa
gcggcgcagcagcaaaaccctagagttgcagaagctactcttattcgaatctcgaaaatt
cttgaaagtttccgtgctgcccccgatcaagtttacacatttgaagctaacctatcaaac
tatgaccgtgctgtggtacatgaggtgtgcaagaaaatgggtatgaagtccaagagttct
gggcgtgggggccagcgacgtgtttccgtttacaagaatacaaagaagttagatgatgta
aaggggaaggaaaacctcactcatttgacattttcaggagaatcaaaaatggttttggga
gaactattttcaaactaccctcctgaagaaggaggctttggagcagaaatagaaggaaaa
catagtggaactgctggtaaaacacgagagaaaaaagatgatatcttctctaaaccttct
agaaaaaaagcagaaattgcaaagaaggttgaatcatttgcttctagaatagaaaaggat
gtaaagttaaaacagattgttgaagggaggtctaagcttccgattgcatcctttatggat
gtcattacatccactatagaatctcaccaggttgttctcatttctggtgagactgggtgt
ggaaagaccacacaggtgccacaatttcttttggaccacatgtggggaaagggtgaagca
tgtaaaatagtttgtacacaacctcggcgtatctctgcaatatcagtttctgagagaatt
tcttatgaaagaggagaaaatgttggagatagcgttggatacaagattcgtttggaaagt
aaaggtgggaagcactcgtcaattgtgttctgtacaaatgggattctattgaggattctg
gtttccaagggcatcactgggtcgcagaatgaagctaatacagcggccaaggaaaatgtt
tccgacttaactcatattattgtggatgaaattcatgaaagggatcgcttctctgatttc
atgttggcaattattagggacatacttccttcacattctcatcttcggctgatattgatg
agtgccactcttgatgctgaacgattttcacaatattttggtggctgcccaattatccgt
gttcctgggttcacttatcctgtcaaagctttccatttggaggatgtgctttctatctta
aattccagagatgataatcatcttgattctgctatgccaaatgtcctggatgaaggtcat
gaattaacagaggaagataaagctgctttagatgaagctattaacttggcttggtcaaat
gatgaatttgattccctcctagatttggtttcttctgaaggaacccctaaggtgtatgat
tatcagcattctgcgagtggactgacaccactgatggtctttgctggaaagggtagggtt
ggtgatgtttgcatgctcctctctttgggcgcaaactgcaatttacagtccaagtgtgga
ttaacagcactgaaatgggctgaacgagaaaaccaggaagaagctgctgaagtaataaga
aaacatgctcagaataccttggctgattcctcggaacaacagcaacttcttgataaatat
atggcaacaattaatcctgaacttattgatgtggttcttatagagcagttattaaagaaa
atatgtgttgattccaaagatggtgctatccttgtttttcttccagggtgggatgatata
aatagaacgcgggagagattacttgcgaacccgttttttaaagatggttccaagtttatt
ataatctctctccattctatggttccatctgtggagcaaaagaaggtattcaaacgccca
cctcagggttgccgaaaaatcattctttcaactaatatttctgaaagtgccattactatt
gatgatgtggtatatgttatagatagtggacgcatgaaagaaaaaagttacgatccttat
aacaatgtatcaactcttcaatcatcctgggtatctaaagcaagtgcaaagcaacgagag
ggacgtgcagggcgctgtcagcctggaatatgttatcatctatattcaaaactcagagaa
tcttctttgccagatttccaagttcctgaaatcaagagaatgccaattgaggaactctgt
ttacaggtgaagttgcttgatccccattgcaagatagaagctttcttgcaaaagacattg
gaccctccggttccagaaaccatacgcaatgctgttgctgttcttgtagatattggggct
ttatcagtggatgaaacattgacagaactgggagagaagattggttgcctacctgttcat
ccattgacgagcaagatgattttctttgccatattgatgaattgccttgacccagctttg
acactggcatgtgcatctgattatagagatccatttacccttcctatgctgcctaatgaa
aagaagagagccgctgctgctaagtttgagcttgcttcattgtatggtgggcacagtgat
cagctagcagttttagcagcttttgagtgctggaacaatgcgaagaataggggtcaagaa
gcatggttttgttcacaatacttcatctcttcaagcaccatgaatatgctgcaagccatg
cgtaaacagctccagagagaactaatacgcaaggggtttattccagaaaatgtctctagt
tgtaatacaaatgcgcatgttccaggtatcgtccatgctgtccttgtggctggtttgtat
ccaatggtggggaggttccttccacctaaaaatggaaagcgtgttgtggagactactagc
ggtgctaaagttcggttgcaccctcagtcccttaattttaaattatcattttggaaatct
aatgactacccattggttatatatgatgagataactcgaggagatgggggcatgaacata
aggaactgtactgtcattggtccactgccattattgctactcgcaacagagattgtagtc
gcacctgcagagaatgatgacgaggatgacgaggaggacgacgacgactatgatagtgca
gatggagctgaaagtgatgaagatggaatggagatacatggcaaattaggcactcaacag
ggtgagaggatcatgtcctctcccgataattcagttatggttgttgtggatcggtggctt
tattttggagcaacagcccttgacgttgctcaaatttactgcttgagagagcaattatct
gcagcaatattattcaaagtgacacatcctcacaaagaacttcctcctgctcttgcggcc
tatacatatactacggcttgtattctgtccaatgatgggctatctgggatttcattacca
ggagaatccgtggagtcactgacttcaatggtccatgcgacagagattgacgagtcctgt
tcaggaaggagagggatcagtcagaatccaaatagcttccttagctcgctgaagaacaac
acacagcagaccgctcctcggtatcacaatgctaggagtcctaatcaaaggcctacattg
caaggctccacatcagctgggcacaatatgcaagggccatcgggtccaaggggagattcc
tataagcggcagcgtggaaatgcaaccagacagcacgtacgctatttgtag
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