Populus nigra (Lombardy poplar): 133695113
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Entry
133695113 CDS
T10372
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03013
Nucleocytoplasmic transport
pnz03015
mRNA surveillance pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133695113
09122 Translation
03013 Nucleocytoplasmic transport
133695113
03015 mRNA surveillance pathway
133695113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133695113
03041 Spliceosome [BR:
pnz03041
]
133695113
03009 Ribosome biogenesis [BR:
pnz03009
]
133695113
03012 Translation factors [BR:
pnz03012
]
133695113
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133695113
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133695113
mRNA cycle factors
Stress granule specific factors
133695113
Spliceosome [BR:
pnz03041
]
Complex C
Other components
EJC/TREX
133695113
Ribosome biogenesis [BR:
pnz03009
]
Eukaryotic type
90S particles
Helicases
133695113
Translation factors [BR:
pnz03012
]
Eukaryotic type
Initiation factors
eIF-4
133695113
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
AAA_22
Cas3-like_C_2
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
133695113
NCBI-ProteinID:
XP_061972914
LinkDB
All DBs
Position
5:complement(17288774..17293709)
Genome browser
AA seq
407 aa
AA seq
DB search
MATSVVPAGRSARRAAAEDEKLVFETTEGVEPVASFDEMGLKEDLLRGIYNYGFEKPSAI
QQRALMPIIKGRDVIAQAQSGTGKTSMIALTVCQLVDTASREVQALILSPTRELAEQTER
VITVIGENINIQVHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIRVL
VLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVKILVKRD
ELTLEGIKQFFVAVEKEEWKFETLTDLYDTLTITQAVIFCNTKRKVDWLTAKMVEFNFTV
SSMHGDMPQKERDAIMSNFRSGETRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNIGDLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaagcgtagtaccagcggggcgcagcgcgcggagggcggcggcggaggatgaa
aagctggtgtttgaaacgacggagggagtagaacctgtggcaagtttcgatgagatggga
ttaaaagaagatttattgagagggatttataattatggatttgaaaagccatcagcaata
caacaaagagctttaatgccgataattaaaggccgtgatgttatagcgcaagctcaatct
ggtactggaaagacttctatgattgctcttactgtttgtcagctcgttgatactgctagc
agagaggtccaggcattgatattgtcacctacaagggaactggcagagcagacagagaga
gtgataactgtaattggtgaaaacattaatatacaagtacatgcatgcattggaggaaaa
agtgtgggcgaggatattcgaaaactagaacatggagttcatgtagtttctgggactcct
ggcagagtctgtgacatgatcaagaggaggtcattacgcacaagagccatcagagtacta
gttcttgatgaatctgatgagatgttgagcagagggttcaaggatcaaatctatgatgtg
tacagatatctcccacccgagcttcaggttgtcttgatttctgctactcttcctaatgaa
attttggagattactagcaagttcatgacagatcctgtaaagattcttgtgaaacgtgat
gagttgactctggagggcatcaagcaattttttgttgccgtggaaaaagaagaatggaaa
tttgagactctgactgacctttatgatactcttaccatcactcaagctgttattttctgc
aatacaaagcgaaaggttgattggctaactgccaagatggttgaatttaacttcactgtc
tcatcaatgcatggcgacatgcctcaaaaggagagagatgcaattatgtctaatttccgg
tctggtgaaactcgtgtactgatcacaactgatgtttgggctcgggggcttgatgttcaa
caggtttctctggtgattaactatgaccttccaaacaatcgagagctttacattcatcga
attggtcgttctggtcgttttggacggaagggtgttgctattaacttcgtcaaaagtgat
gatatcaggattttaagagatattgaacagtattacagcacccagattgatgaaatgcct
atgaacatcggtgatctgatataa
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