Populus nigra (Lombardy poplar): 133695421
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Entry
133695421 CDS
T10372
Name
(RefSeq) F-box protein SKP2B
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133695421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pnz04121
]
133695421
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
133695421
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GFIT
Motif
Pfam:
LRR_6
LRR_4
LRR_At5g56370
LRR_Zer-1
F-box-like
LRR_8
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
133695421
NCBI-ProteinID:
XP_061973397
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Position
5:complement(5609880..5612801)
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AA seq
377 aa
AA seq
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MAGEGKARSEDLNLCFEKLMLLAFGGGKSGSSEGGVKMEGAVITEWKDIPVELLLRIVSL
VDDRTVIMASGVCCGWRDAICMGLTHLCLSWCKKNMNNLVLSLAPKFTKLQTLVLRQDKP
QLEDHAVETIARYCHDLQDLDLSKSFKLSDLSLYALAHGCPNLTKLNISGCTAFSDAGLE
YLTKFCQKLKILNLCGCVKGATDRALQGIGRNCSQLQSLNLGWCEGVGDVGVMSLAYGCP
DLRTLDLCGCVCITDDSVIALANRCPHLRSLCLYYCRNITDRAMYSLVRNRVKNKLSMWE
SMKGRCDEEGLRSLNISQCTALTPPAVQALCDSFPALHTCSGRHSLVMSGCLNLTSVHCV
CAVQAHRPASSFPHPAH
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtgaaggaaaggcgaggagtgaagacttgaacttgtgtttcgagaagctgatg
ctgcttgcttttggtggtggaaagagtgggagtagtgaaggaggtgtgaaaatggaaggt
gcggtgatcaccgagtggaaagatattcccgtggagctgttgttaaggattgtttctctt
gttgatgataggactgtgattatggcttccggggtttgttgtggatggagggatgctatt
tgcatgggactcacccatctctgtctctcttggtgtaaaaagaacatgaacaacttggtt
ctctctcttgctcctaaatttacaaaactccaaactcttgtgctgcgccaggataaacca
caacttgaggatcatgctgttgagactattgctaggtactgccatgatctgcaggacctg
gatctcagcaaaagctttaagctcagtgatctctctctgtatgcattagctcacggttgt
ccaaatcttacaaaactcaacatcagtgggtgtacggcatttagtgatgctggtcttgag
tatcttaccaagttttgccaaaaattaaagatcttgaatctctgtggatgcgtcaaaggt
gcaactgaccgtgccttgcagggtattggacgcaactgcagtcagttgcagtctttgaat
ctgggatggtgcgagggcgtgggtgatgttggagtaatgagtttagcttatggatgtcct
gatctcagaaccctcgacttgtgtgggtgtgtctgtataacagatgatagcgtgattgct
ttggcaaacaggtgtccccatctgagatccctctgtctgtactactgccgaaacatcacg
gatagagcaatgtattcccttgtccgcaatcgagtgaagaacaagctttcaatgtgggaa
tcaatgaaaggcaggtgtgatgaggaaggattgaggagtctaaatatcagtcagtgcacg
gcactcacacctcctgctgttcaggctctatgtgactcgtttcctgcacttcacacctgc
tcagggaggcattccctcgtcatgagtggctgtttgaacttgacatctgtgcactgtgtc
tgtgctgtccaggcacaccgccctgcaagttcttttcctcatccagcacattga
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