Populus nigra (Lombardy poplar): 133695844
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Entry
133695844 CDS
T10372
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133695844
Spliceosome [BR:
pnz03041
]
Complex C
Other components
Step II factors
133695844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
ABC_tran
AAA_30
nSTAND3
SLFN-g3_helicase
Sigma54_activ_2
Helicase_RecD
AAA_29
NPHP3_N
AAA_16
SRP54
Sigma54_activat
ATPase_2
T2SSE
FtsK_SpoIIIE
DAP3
NB-ARC
RsgA_GTPase
G-alpha
Motif
Other DBs
NCBI-GeneID:
133695844
NCBI-ProteinID:
XP_061973792
LinkDB
All DBs
Position
6:13740634..13751109
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AA seq
703 aa
AA seq
DB search
MASHLPIVQFEDKIMKTVEDNAVVVIIGETGSGKSTQLSQMLHRRGYTKSGIIAVTQPRR
VAAVSVARRVAQELGVTLGEEVGYAIRFEDRTSDLTRIKYLTDGVLLRECLSNPELNQYS
VIILDEAHERSLNTDILMGLVKRLVKMRASKLKVLITSATLDGEKVSEFFSDCPVLNVPG
KLYPVEILYSEERPKSYIESSFRTAMDIHVREPEGDVLIFMTGQDDIDKLVSKLEDRVQS
LEEGSCMDAIILPLHGSLPPELQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSG
YVKQRQYNPSTGMYSLDIVQISKVQANQRAGRAGRTRPGKCYRLYSSEVYQEELLDVTVP
EIQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSFESLEDALKQLYLIDAIDDTGLITSV
GQTMAELPLEPSLSRTLMEANENGCLSQALTVAAMLSAETTLLAGQSSKNNEKKRKHPPP
DLPDGSGYGDHVQLLQIFEQWDQNEFDIGWCKDKGLQVRGMMFVKDVRRQLSQLMQKIAK
GSLNVRTNERYKERQRDYKNLRKALCVGYANKLAERMVQHNGYRTIGFKPQLVQVHPSST
LKTDEDGMFPNYVVYHELIATSRPFMRNVCAVEMPWVNPILKKLEKLNIDKLSGGSGHSI
REESETKVSSLPKKEEAVTGVPDDRESRIQAARDRFLARKGKK
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtcatctgcctatagtgcaattcgaagacaaaataatgaaaaccgtggaagat
aatgctgtggtagtgataattggagagactggttcaggaaagagtactcaactctctcag
atgcttcaccgcagaggctacaccaaatccggaattattgccgtcactcagccccggcga
gtcgccgccgtctccgttgcaagacgcgttgcgcaggagctcggcgttactcttggggag
gaagtgggttatgccattcgatttgaagacagaacttcagatttgacccggatcaagtac
cttactgatggagtgctccttcgcgaatgtctgtcgaacccggagcttaatcagtattca
gtgatcatattggatgaagctcatgagaggagtttgaacacggatattttgatgggactg
gtgaaacgtttggttaaaatgcgtgcctccaaattgaaggttctcatcacttcagctact
ctcgatggtgaaaaagtatcagaattcttttcggactgccctgtattgaatgtccctgga
aagttatacccggtggaaatattgtacagtgaggagcgtcctaaaagctatatcgagtct
tctttcagaacagctatggatatacatgttcgggaaccagaaggtgatgtcttaattttc
atgaccggacaggatgatatagataagttggtttcaaagttggaggatagagttcaaagc
ctagaggaaggctcctgcatggatgcaattatccttccacttcatggttctttaccacct
gaactgcaggtgcgtgtatttagccctccacctccaaactgtaggcgatttatcgttgca
acaaatattgctgaaacttctttgactgttgatggtgttgtatacgttattgattctgga
tatgtaaagcaacggcaatacaacccgtcaaccggcatgtattctctcgatattgttcaa
attagcaaagtgcaggcaaatcagcgtgcaggacgagctggaagaacacgacctggaaag
tgctatcggctatattcctctgaggtttaccaagaagaattgcttgatgtaacagttcct
gaaatacagcggtcttctcttgctgggagtgttctttacttgaaatcattagatctgcca
gatattgacattctcaagtttgattttctcgatcccccttcatttgagtcactagaagat
gctttaaagcagctatatctcattgatgccatagacgatactggtttgatcacaagtgtt
ggacaaacgatggctgaacttccactagaaccctcactttcaagaaccttgatggaggca
aatgagaatggttgcttatcccaggctttgactgttgctgccatgttgtcagcggaaacc
acgttacttgctggacaaagtagcaagaataatgaaaagaagaggaaacaccctccccct
gaccttcctgatggttctggttatggtgatcatgttcagttgctacagatttttgagcaa
tgggatcaaaacgaatttgatattggctggtgcaaagacaaaggtttgcaggtgcgaggg
atgatgtttgtcaaagatgtgcgaagacagttgtcccagttaatgcaaaaaatagcaaag
gggtcattaaatgtacgaacaaatgaaagatataaagaaagacaacgggattacaagaat
ttgaggaaggctttgtgtgttggctatgcaaataagcttgccgagagaatggtacaacac
aatggctatagaactataggtttcaagccacaactagttcaggtgcatccatcctccact
ctgaaaacagatgaagatggaatgtttccaaactacgttgtgtatcatgaactcattgcc
acctcccgtccatttatgcgcaatgtatgtgctgtagagatgccatgggtcaaccccatt
ttgaagaagcttgagaaactgaatatcgacaagctaagtgggggatctggtcatagtatt
agagaggaaagtgagacaaaggtctcctccttgccaaagaaagaggaggctgttactgga
gttccagatgaccgtgaaagtagaattcaggcagctagggatcgctttcttgctcgtaaa
ggaaagaaatga
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