Populus nigra (Lombardy poplar): 133695940
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Entry
133695940 CDS
T10372
Name
(RefSeq) E3 ubiquitin-protein ligase RHF1A-like isoform X1
KO
K19043
E3 ubiquitin-protein ligase RHF [EC:
2.3.2.27
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pnz04121
]
133695940
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133695940
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133695940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-ANAPC11
zf-C3HC4_4
zf-RING_Vps41
zf-Nse
zf_RING_Vps8
zf-C3HC4_3
DUF6274
Motif
Other DBs
NCBI-GeneID:
133695940
NCBI-ProteinID:
XP_061973903
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Position
6:complement(11011691..11015216)
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AA seq
417 aa
AA seq
DB search
MANFASLTSSFSDTPMVSAAVASSSSSSSSLGAGVDDAFEDDFCSICLDPFTAQDPATVT
CCNHEYHLQCILEWSQRSKECPICWQLLVLKDHASQELLAAVETERLLRSRNSTPASMIV
PHLDDDYDVEQDSYSDDSDFDEHILQHLAAAASSRAHHVHERERQRSNGLGPSQVIAFTS
PEHVATVQQTCTSPEEGQTLIHGSSVINSPTPDTLSVNVQNLSSVTPPDVNQVSTTAVNS
PFKPRILFRQPPTDTPQGQGSSEVLSLSDSIKSKWFAASARYKESLSKSTRGIKEKLVAR
NNSVKELSKEVQREMSAGIAGVARMIERLDLTTKRTGPSMSDSGFTGGASNFSWKGKGVE
QNIIAQALAKTSEEIDRDTSLGASSHASGTVQARVEISHVQVWKPLKNVLIYPPLPK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggcgaattttgcttctcttacgtcttcattctctgatactccaatggtttcagctgct
gttgcgtcgtcgtcttcttcctcttcttctctcggagctggagtcgacgatgctttcgaa
gacgacttttgcagtatttgcctcgatcctttcaccgctcaagaccctgccactgttacc
tgctgcaatcatgaatatcatcttcagtgtattcttgaatggtcgcagagaagcaaagaa
tgcccgatttgctggcagcttcttgtcctgaaagaccatgccagccaagaacttctagct
gctgtcgagactgagaggctcttaaggtcaaggaactcgactcctgcatccatgatcgtt
cctcacttggatgatgattatgatgtagaacaggattcctattcagatgactctgatttc
gatgagcatatcctgcagcatcttgctgccgctgcctccagcagagctcatcatgttcac
gaaagggagaggcagaggtctaacggacttggtccctcccaggttattgcctttacctct
cctgaacatgtagccactgttcagcaaacatgcacttcaccagaagaaggtcaaacttta
attcatggctcatcagtgatcaattcaccaactcctgacacactatcagttaacgttcaa
aatttgtcatctgtgacccctcctgacgtgaaccaagtttctactactgctgtcaatagc
cccttcaaacccaggattctctttagacagccaccaactgatacaccccaggggcaaggt
tcatcggaggtgctatctctctcagactctattaaatctaaatggtttgctgcttcagcc
aggtacaaggaatcactttcaaaaagtactagaggcataaaggaaaagctagttgcaagg
aataattcggtcaaggagctgagcaaagaagttcagagggaaatgagtgcaggaattgct
ggtgttgcacgaatgattgagcgcttggatcttaccacaaaacgcacgggaccctccatg
tctgattctggttttactgggggagcttcaaatttctcctggaaggggaagggtgtggaa
cagaacatcattgctcaggctttggccaaaacaagtgaggaaattgatcgtgatacaagt
ttaggtgcatcctcacatgcctctggtactgtccaagcccgagtggaaatctcccatgtg
caggtttggaaaccactgaagaatgttttaatatatcctccattgccgaaatag
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