Populus nigra (Lombardy poplar): 133696221
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Entry
133696221 CDS
T10372
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133696221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133696221
03009 Ribosome biogenesis [BR:
pnz03009
]
133696221
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133696221
Spliceosome [BR:
pnz03041
]
Complex A
U1 snRNP components
U1 related factors
133696221
Complex B
133696221
Ribosome biogenesis [BR:
pnz03009
]
Eukaryotic type
Pre-60S particles
Helicases
133696221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Motif
Other DBs
NCBI-GeneID:
133696221
NCBI-ProteinID:
XP_061974321
LinkDB
All DBs
Position
6:6588779..6595648
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AA seq
1162 aa
AA seq
DB search
MATAEPASATVGPRYAPEDPTLPKPWTGLIDGSTGLLYYWNPETNITQYEKPPSVPPQMP
PALPPNASTPKLAQIPMAHSSQPNGLVAQAAQQTMQASQQQGQQISQLHQQYGQVTSQQH
GPQVVQVSNQQGAPQQGSQLAQAIQQPGQLRSMQHPGQHLLSHAGQQMPQQGGQQVPQQV
GQYIMQHQSMQMPQPQGHQYAYQQPMQYMTYQQNVLPQGQQSSQQQAHLSAQGLQFPNQH
EYKAALPKREEVEFQQGNQTGFSPARFQQTGGSSSQNLSSAGSNPVCMPHSGVQLGQAQQ
FGSSSVNIQHPPSMVQMQQIGADFHQQHGPRFQNHMGPSVMHNQQSNLPPAGLNMGYENN
AHGRSGNDHYINAKVEGPVMSPHQPEFTAMSRARKQQDSRTGSVPFQNVGPGHGGGFNAD
GHPNHNMYSHATSGPPFPNNALMRPSFIETADISNLSPAEVYRQEHEVSATGDNVPAPFM
TFEATGFPSEILRDIHSAGFVSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI
LLQQRRNNAQNGPTVLVLAPTRELATQIQDEVMKFGRSSRVSCTCLYGGAPKIPQLKELE
RGADIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPQRQT
LMFTATWPKEVRKIASDLLVHPVQVNIGSVDVLAANKSITQYVEVVPQMEKDRRLEQILR
TQERGSKAIIFCSTKRLCDQLARSIGRNFGAAAIHGDKSQGERDWALNQFRSGKSPILVA
TDVAARGLDIKDIRIVINYDFPSGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKYAADLV
KLLEGANQHVPVEVREMALRGGPSFGKDRGLNRFDAGRGGGRWASGGRGGMRDGGFGGRG
GMRDGGFGGRGGMRENSFGGRGGMRENSFGGRGGMRDGNFGGRGGRNDLFSGRESRGRGF
GGSGGGHVGWGRNDRGPNDRHSYMDGRGRGHGRFDGRRDMTDKSRGRSFSRSPDRARTRG
YSRSRSRSRSRSRSWTRSRSRSPRRSPSRSRSPRRSRSRSPRRSRSRSGIRSHSPQHASS
HSRSPRRSPDYDRFERPRERNIDEKDMTVPELKASEQEMSPMSPGTHGNAFSGAELLPAT
GSAEPVQQEATGDPGLPSVAEA
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggctactgctgaaccagcttcagctaccgttgggccacggtatgctccagaagaccca
acccttcccaaaccatggacaggactgattgatggaagtacaggtcttttatattactgg
aatcctgaaaccaacatcacacagtatgaaaagcccccatctgtgccgccacagatgcct
cctgctctacctcctaatgcttctacgcctaagttggcccagatacccatggcacactca
tcgcaaccaaatggcttggtggctcaagctgcacaacagactatgcaagcatcacagcaa
caagggcaacagattagccagttgcatcaacaatatggacaagtaacttcacaacagcat
ggtccccaagtagtgcaggtttctaaccagcagggtgcaccacagcaaggctcacagttg
gcacaggccattcaacaaccggggcagttgagatcaatgcagcatccaggtcagcatctg
ctgtcccatgcagggcagcaaatgcctcaacaaggaggtcagcaggtgccccagcaggta
ggacagtacattatgcagcatcaaagcatgcaaatgccacaaccacaaggacatcagtat
gcatatcagcagccaatgcagtacatgacatatcagcaaaatgtgcttccacaaggccaa
caaagctcgcagcagcaggcacatcttagtgcacaagggttgcaatttcctaatcaacat
gaatacaaggcagcgttgccgaagagagaggaagttgagttccagcaaggaaatcaaact
gggttttctccagctcggtttcaacagactggtggatcatcctctcaaaacctgtcttct
gctggaagcaatccggtttgcatgccgcattctggtgttcagttgggtcaagctcagcag
tttggtagctcttctgttaatattcaacatcctccttccatggttcagatgcagcaaatt
ggggctgattttcatcagcagcatggtcctaggtttcaaaatcatatgggtccctcagtg
atgcacaaccagcagtctaatctgccccctgctgggttaaatatgggttatgagaacaat
gcacatggtaggtctggcaatgatcattatattaatgctaaagtggaagggcctgtgatg
agtccccatcagcctgagttcacagctatgtctagggcaagaaagcagcaggattcaagg
acagggagcgtcccatttcagaatgtcgggcctggtcatggtggcggatttaatgcagat
gggcatcccaaccataatatgtatagtcatgcaaccagtggtccaccttttccaaacaat
gcattgatgagaccctctttcatcgaaactgcagacatttctaacctctcgcctgctgaa
gtttaccgccaggagcatgaagtctcagctacgggtgacaatgttcctgccccattcatg
acttttgaagccactggtttcccttcggagatattacgagatatacattccgctggattt
gtatctccgacaccaattcaggcacaaacatggccaattgcgctacaaagtagggatata
gtggccattgccaaaactggttctggtaaaacattgggttacttgattcctgccttcatt
cttcttcaacagcgacgaaataatgctcagaatggacctacagtgttagtcttggctcca
accagggagcttgccacgcaaatacaagatgaggtgatgaaatttggtcgatcttctagg
gtctcttgcacgtgcttgtatggtggagctccaaagattcctcaactgaaagaattagaa
aggggagcagatatagttgtggcaacacctggtcgactcaatgacatccttgaaatgaaa
aggattgactttaggcaagtttcactccttgtgcttgatgaggctgatcgaatgcttgac
atgggatttgagcctcagatccgtaagattgtgaacgaaatacctcctcaaaggcaaaca
cttatgttcactgcaacctggccaaaagaagtgaggaaaatagcaagtgatcttcttgtt
catcctgtccaggtgaacatcggcagtgttgatgtgcttgctgccaacaagtcaatcaca
cagtatgttgaagtggtcccacaaatggaaaaggatcggcgcttggagcaaatccttaga
acacaagagagaggttccaaggctatcattttctgctctacaaagagattgtgtgaccag
ctagcacggagtattggacggaactttggagccgctgcaatccatggagacaagtctcaa
ggtgagagagactgggctttaaaccaattccggagtggaaaatctccaattttagttgcc
actgacgttgctgcccgtggtcttgatatcaaagacataaggattgttatcaactacgac
ttcccctctgggattgaggactatgttcaccgaattggtagaactgggagggctggtgca
actggggtgtcatacacctttttctctgagcaggactggaaatatgcagctgacctggtt
aaactgctggagggagctaatcagcatgtgcccgtagaggtgcgagagatggcgttgcgt
ggtggacctagctttgggaaggatcgagggttgaaccgttttgatgctggcaggggtggt
gggcggtgggcttctggtggccgtggtgggatgagagatggtggctttggtggtcgtggt
gggatgagagatggtggctttggtggccgtggtgggatgcgggaaaacagctttggggga
cgtggtgggatgagggaaaacagcttcgggggacgtggtgggatgagggatgggaacttt
gggggacgtggggggagaaacgacttgttttctgggcgggaaagcaggggtaggggattt
ggtggctctggtggtggacatgtaggctggggtaggaatgatcgaggcccaaatgatcgt
catagttacatggatggccgtggacgtggtcatggaagattcgatggtagaagggatatg
actgataagagtaggggcagaagtttcagtcgaagccctgatagggctcgaacacggggt
tatagccggagccggagtcgtagtaggagtcggagtcggagctggaccagaagccgcagc
cgcagcccccgacgcagccccagccgcagccgcagcccccgccgcagccgcagccgtagc
ccccgacgcagccgcagccgcagcggcatccgcagccatagtcctcaacatgccagtagt
cacagccgtagccctcgaaggagccctgattatgatagatttgaaaggcctcgagaaaga
aacattgatgagaaggatatgacagttccagaattgaaggcttcagaacaagaaatgtct
ccaatgtctccgggcacacatggtaatgcattttctggagcagagctgctgccagccact
gggagtgctgagccagtgcaacaggaggctacaggagatccagggcttccttcagttgct
gaagcttga
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integrated database retrieval system
