KEGG   Populus nigra (Lombardy poplar): 133696265
Entry
133696265         CDS       T10372                                 
Name
(RefSeq) ras-related protein RABF1 isoform X1
  KO
K07887  Ras-related protein Rab-5A
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz04144  Endocytosis
pnz04145  Phagosome
pnz04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    133696265
   04145 Phagosome
    133696265
   04148 Efferocytosis
    133696265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pnz04131]
    133696265
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pnz04147]
    133696265
   04031 GTP-binding proteins [BR:pnz04031]
    133696265
Membrane trafficking [BR:pnz04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    133696265
 Endosome - Lysosome transport
    133696265
Exosome [BR:pnz04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   133696265
  Exosomal proteins of other body fluids (saliva and urine)
   133696265
  Exosomal proteins of colorectal cancer cells
   133696265
  Exosomal proteins of bladder cancer cells
   133696265
GTP-binding proteins [BR:pnz04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    133696265
SSDB
Motif
Pfam: Ras Roc Arf RsgA_GTPase Gtr1_RagA GTP_EFTU MMR_HSR1 AAA_7 AAA_16
Other DBs
NCBI-GeneID: 133696265
NCBI-ProteinID: XP_061974389
LinkDB
Position
6:1723169..1726984
AA seq 201 aa
MGCSSSLPDRSTGRLGGLNNSESGGVADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP
TSKVTIGASFLSQTIALQDSTTIKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPE
TFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTQDGIEYAEKNGMFFIETSAKT
ADNINQLFEEIAKRLPHPSST
NT seq 606 nt   +upstreamnt  +downstreamnt
atgggttgctcctcttctcttccagataggagtactgggagattgggtggacttaacaat
tcagagagtggtggagtggctgatgccaaaaacctacgcgtaaagctggttttattaggt
gattctggtgttggtaaaagctgtattgttcttcgctttgttcgtggccagtttgatcca
acatccaaggtaactattggagcttcatttttgtcacaaacaatagctttacaggattct
acaacaattaagtttgagatatgggatactgctggacaagaaaggtatgccgcactagca
ccgctatattacagaggtgctgcagttgcagttattgtgtatgatataacaagcccagag
acattcaacaaagcacagtattgggttaaggagctacaaaaacatgggagccctgatata
gtcatggctttagtaggtaacaaggctgatcttcatgagaagcgagaagtacccactcaa
gatggcattgaatatgcggagaagaatgggatgttctttattgagacatctgcaaaaact
gcagataatataaatcagctgtttgaggaaattgctaagcgactcccgcacccttcctca
acatga

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