Populus nigra (Lombardy poplar): 133697094
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Entry
133697094 CDS
T10372
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03013
Nucleocytoplasmic transport
pnz03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133697094
mRNA cycle factors
P-body specific factors
133697094
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133697094
NCBI-ProteinID:
XP_061975428
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Position
6:complement(2393891..2406844)
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AA seq
1186 aa
AA seq
DB search
MDHHEDESRGGSETPRKEDDEEAVARLEEMKKSIEAKVALRQSNLNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMEELRNVNLSKFVSEAVTSICDAKLRTSDIQAAVQIC
SLLHQRYKDFSPSLVQGLLKVFFPVKSGEDLDVDKNSKAMKKRSTLKLLLELFFVGATED
SSVFINIIKDLTSAEHLKDRDTTQTNLTLLASFARQGRVFLGLPLSGQEIHEEGLNITTD
QKKTFRKAFHAYYDAVAELLQSDHASLRQMEHENAKILNAKGELSDENVSSYEKLRKSYD
HLYRNVSSLAEALHMQPPVMPEDGHTTRLTSGEDISSPAAGKDSSVLEALWDDEDTRAFY
ECLPDLRAFVPAVLLGEAEPKANDHSVKTQDQQSELAPESDQGQSTQDMAEVTAESGTLQ
EGKSTEKGKDKEEKDKEKVKDPEKEKGKEKDAERKGENEKEKLKSLEGTNLDALLQRLPG
CVSRDLIDQLTVEFCYFNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSF
MLLQLLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFRIAPASTVFSCLKACLDDFTHH
NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP
ERSARVSKVRPPLYQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEAYLLKCFMKVHKGK
YGQIHLIASLTAGLSRYHDEFAVSVVDEVLEEIRLGLELNDYGMQQRRIAHMRFLGELYN
YEHVDSSVIFETLNLILVFGHDTPEQDVLDPPEDCFRIRMVIILLETCGHYFDRGSSKRK
LDRFLMHFQRYILSKGALPLDVEFDLQDLFVELRPNMIRYTSIEEVNVALIEHEENERIV
STDKANSEKHSDIDKRLSRTASSIISANGQRTTNGNEENGLHDIGGSDTDSGSGTIDQDG
HDEEELDEENHDDRCDTEDEDDDGGGPASDEDDEVHVRQKFAEADPHEVASFEQELRAVM
QESMEQRRQELRGRPALNMVIPMNLFEGSPRDHHGRGVGGESGDEDEEAGGNKDVQVKVL
VKRGNKQQTKQMYIPRDCSLVQSTKQKEAAEFEEKRDIKRLVLEYNDREEEENNGLGNQT
LNWMPGGTSRVTSRSSTWEGSRGRGAGSRYGYYHHSGSGLYHGRRR
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccatgaagatgagagccgtggtggaagtgaaactcctagaaaggaagacgat
gaggaagctgttgctcgacttgaggaaatgaagaaatctatcgaggcaaaagttgctctt
cgtcaaagcaatttgaaccctgaaaggcctgactcaggatttctcaggacattggattcc
agcattaagcgcaatacagcagttattaaaaaattaaagcagataaatgaggaacagagg
gaaggactgatggaagagttgcgaaatgtgaaccttagcaaatttgtcagtgaagctgta
acatccatttgtgatgcgaaacttagaacttctgacatacaagcagctgttcagatctgt
tcactgcttcatcaacgatacaaagacttctcgccgagcctagtacaagggctcttgaaa
gtcttttttcctgtaaaatctggagaagacttggatgtggacaagaactcaaaggctatg
aagaagcgaagcaccttaaagctgcttttggaacttttctttgttggagctacagaagac
agcagtgttttcatcaatattattaaggatcttaccagtgcagagcacttaaaggacaga
gatactacccagacaaatctgactctccttgctagttttgctcgacaaggaagagttttt
ctgggacttccactatctggacaagaaattcatgaagagggccttaacatcacgacagat
caaaagaaaaccttcaggaaggccttccacgcatactatgatgctgtcgctgaactactt
cagtcagatcatgcatcacttcgtcaaatggagcatgaaaatgcaaagattttgaatgct
aaaggagagctgagtgatgaaaacgtttcatcatatgaaaagctgcgaaaatcttatgac
catttgtaccgtaatgtgtcatctttagcagaagcacttcatatgcaacctccagtgatg
ccagaagatggtcatacaactaggcttactagcggagaggacatatcatcgcctgctgca
gggaaagattcttctgtcctcgaagctttgtgggatgatgaagatactagagccttctat
gaatgcttaccggatctcagagcatttgttccagcagtgttattgggagaggcagaaccc
aaagcgaatgatcattctgtgaagactcaagatcaacaaagtgagctggcacctgaatca
gaccaaggccaatccacccaagacatggcagaggttactgcagagtctggcactttgcag
gagggaaaaagtacggagaaaggaaaggataaggaagagaaagataaagagaaagtaaaa
gatcctgaaaaagagaaaggcaaggaaaaagatgcggagagaaaaggagaaaatgagaag
gagaaactcaaaagtcttgaagggactaatctggatgctctgttacagaggctccctggt
tgcgtcagccgtgacctaattgatcaattgactgtagagttttgttattttaattcaaag
tcaaatcggaaaaagcttgtgagggcattatttaatgtacccaggacatctctggaactg
ctaccatactactcacgcatggttgctactctctcaacttgcatgaaggatgtgtctttc
atgctcttacagttgttagaggaggagttcaatttcttaattaataaaaaggaccaaatg
aacattgaaacgaagatcagaaatattagatttattggagagctatgcaagttcagaatt
gcaccagcaagcactgtttttagttgcttgaaggcttgtttggatgatttcactcaccat
aacattgatgttgcttgcaatcttcttgagacatgtggccgttttctgtatcgttctcct
gaaactactgtgcgcatggctaatatgttggagatacttatgcgcttgaaaaatgtcaaa
aatttggatcctcggcatagcacccttgtagaaaatgcttactatctgtgcaaaccacct
gaaaggtctgcacgagtgtctaaagtccgtcctcccttgtatcagtatatcagaaaatta
ctattctccgatctagacaagtcttctattgagcatgtgctcaggcaacttcgtaaatta
ccatggagtgaatgtgaggcataccttttaaagtgctttatgaaggttcataaagggaag
tatggtcaaattcacttgattgcttctctcactgctggcttgagccgttatcatgatgaa
tttgcagtgtcggttgttgacgaggttttggaggagattaggcttgggcttgaattaaat
gactatgggatgcagcaaaggcgcatagcccacatgcgattcttgggggaactatacaat
tatgaacatgtggattcttctgtgatttttgagactctcaacttgatccttgtctttggt
catgacactccggagcaagacgtgctagatccaccggaggattgtttccgcatcaggatg
gttatcattcttctggagacttgcggacactactttgaccgaggttcttctaagaggaaa
cttgatcgatttttaatgcactttcagaggtatattctcagcaaaggtgcactacctctt
gatgttgaatttgacttgcaggacttatttgtggaattacgtccaaatatgatacgatat
acatccattgaagaagttaatgttgctcttatagaacatgaggagaatgaacgtattgtc
tccactgacaaggccaatagtgaaaagcactctgacattgataaacgattgagtaggact
gcttccagtatcatatctgccaatggacaaagaaccacgaatgggaatgaggaaaatgga
ttgcatgacattggtggcagtgacactgattcaggcagtggcaccattgaccaggatgga
catgatgaagaagagttagatgaagagaatcatgatgataggtgtgacacggaagatgag
gatgatgatgggggtggacctgcttctgatgaggatgatgaagtccacgtcagacaaaag
tttgcagaggcggaccctcatgaagtagctagttttgagcaggagttgagggctgtaatg
caggaaagcatggagcaacgcaggcaggaactccgtggtcggccagcattaaatatggtg
atacccatgaacttgtttgaggggtcccctagggatcatcatggaaggggggttggaggg
gaaagtggtgatgaggatgaggaggctggaggaaacaaggatgttcaggtgaaagttctt
gtgaagcgtgggaataagcaacaaacaaagcagatgtacattcctagggattgctctctt
gtgcagagcacaaaacagaaagaagcagccgagtttgaagagaaacgagacatcaagaga
ctggtgttggagtataatgatagagaagaggaggagaataacgggttggggaatcagacg
ttgaattggatgccaggtggtaccagcagagttaccagccgcagcagcacatgggaagga
agtagaggaagaggtgctgggtcacgatacgggtattatcatcattcaggcagtggactc
tatcatggcagaagaaggtga
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