Populus nigra (Lombardy poplar): 133697108
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Entry
133697108 CDS
T10372
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133697108
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133697108
Translation factors [BR:
pnz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133697108
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133697108
NCBI-ProteinID:
XP_061975452
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Position
6:9021536..9033669
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AA seq
1210 aa
AA seq
DB search
MLSSLLHSPPWQIPQTVKPSTSVSSTAMKDRSPPSSFGAVYVPPHCRIRSLVSTPYCHSS
SNASSPSPPIGSKFRENHSESTTVLNPRNRPPLHQQQRNGVADNNDFNSNKKPAPKFVSA
YDDRESEEGSDLETDSPVVQPGACLSDDIEEWKRKLTMLLHDKEKQELISREKKDRRDFE
QIAALASKMGLHSHSYAKVVVFSKAPLPNYRFDLDDKRPQREVNLPLGLLQRVDAYLGDY
LYQRSRINSNFPDTFSRSSSSSLSTDDGLFEQPEPLASSKAVTEKILWRRSMQLCDQQQA
WQESPEGCKMVEFRKTLPAYKEKDAIMAAISQNQIVIISGATGCGKTTQIPQFILESEVE
SVRGAVCNIICTQPRRISAMSVSERIASERGEKLGERVGYKVRLEGVKGKDTHLLFCTTG
ILLRRLLVDRSLKGITHVIVDEIHERGMNEDFLLIVLKDLLPHRPELKLILMSATLDAEL
FSSYFDGAPILRIPGFTFPVRTHFLENILEMTGYRLTQCNQIDGYGQEKMWRIGKQAPRK
RKSQIASSVEDALRTADFKEYSSQTRESLSCWNPDSIGFNLVEYLLCNICENERPGAVLV
FMTGWDDISSLKDKLQAHPFLGDPSRVLLLTCHGSMASSEQRLIFDEPQEDVRKIVLATN
IAETSITINDIVFVLDCGKAKESSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECY
HLYPRCVYDAFAEYQLPEILRTPLQSICLQIKSLKLGSISDFLSRALQSPELLAVQNAIE
YLKIIGALDQNENLTVLGGYLTMLPVEPKLGKMLVLGAILNCLDPVLTVVAGLSVRDPFL
MPLDKKDLAEAAKSQFSGDYSDHLALVRAYEGWKDAERDLSGYEYCWRNFLSVQSMKAID
SLRKEFFSLLMDTGLVDGNPTTCNAWSHDEHLVRAVICSGLYPGICSIVHNEKSFSLKTM
EDGQVLLHSNSVNARESKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVLLLFGGSISRGDA
DGHLKMLGGFLEFYMQPSVAEMYQSLRRELDELIQTKLLNPRMDIHMHHELLSAVRLLVS
EDNCDGRFVFGCHFFKSSKPTVFATQPTLISRGDSGPGGDNSKSQLQTLLTRAGYAAPSY
KTKQLKNNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAEALQWLVGGTQTSQEYINHMSM
LLKKSKKDHY
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgctatcttctctccttcattcacctccttggcaaattccccaaaccgtaaaaccctcg
acatctgtctcctccacagcaatgaaggaccggtcgccgccttcctcattcggcgccgtt
tacgtccctccacactgccgtatccgctccctcgtctccactccctactgtcactcctcc
tctaatgcttcttctccttctcctccaattggctccaaatttcgcgaaaatcacagcgag
agcactactgttttaaaccctagaaaccgtcctcctcttcatcaacaacagagaaacggc
gttgctgataataatgattttaacagtaataagaaaccggcaccgaaatttgtttctgcc
tacgatgaccgagaatcagaggaaggctctgatcttgaaacggactcccccgtggttcaa
cctggtgcttgcctttctgatgacattgaggagtggaaacggaaattaacaatgcttttg
catgacaaggagaagcaagagttgatttcaagagagaaaaaggaccggcgtgattttgag
caaatagctgctcttgcgagtaaaatgggcttgcacagccattcctatgcgaaagtagtt
gtttttagcaaggctccgcttccaaactacagatttgatttggatgacaagcgtccgcag
agggaggtgaacttacctcttggtttgctacaaagagttgatgcttatcttggagactac
ctctatcaaaggtccaggattaatagtaattttccagatacattttctagatcaagcagt
agtagtctctccacagatgatgggctttttgagcaacctgagccactggcatccagtaag
gctgttacggagaaaattctgtggcggagaagtatgcaattgtgtgatcagcaacaagct
tggcaggaatctccagaaggctgcaagatggttgaatttcgtaaaactcttcctgcttac
aaagagaaggatgccataatggcagccatttcacaaaatcagattgttataatctctggt
gcaactggctgcggcaaaaccacgcaaattccacaattcattttagaatctgaggtagaa
tctgttcgtggagctgtttgtaatattatatgtacacagccaagacgaatatctgctatg
tctgtttctgaaagaattgcttcagagagaggggagaaattgggtgaacgtgtcggatac
aaggttcggcttgagggtgtaaagggaaaggatacccaccttctcttctgtaccactggc
atcctgttgagaagactgcttgttgatagaagtttaaaaggaataactcatgtgattgtg
gatgagatacatgaacgtggaatgaatgaggattttctgctcattgtccttaaggatctc
cttcctcatcggccagaactgaagctgattctaatgagtgcaacccttgatgccgagctt
ttctcatcatattttgatggagctccaatactacgcattccaggttttacattcccggta
cggactcattttctggaaaatattctggaaatgacgggttacagattgacccaatgcaac
caaattgatggttatggtcaggaaaagatgtggaggataggcaaacaagctccgagaaaa
aggaagagtcaaattgcttcaagtgttgaggatgctcttagaacagctgattttaaggag
tacagtagccagactcgggagtctttgtcatgttggaatcctgatagcataggttttaat
cttgttgaatatctcttatgtaatatttgtgagaatgagaggccaggtgctgttcttgtt
ttcatgacggggtgggatgacataagttctttgaaggataagcttcaagctcatcctttc
ttaggagatccaagccgagtcttgttgctcacttgccatggttctatggccagctcagag
cagaggttaatatttgatgagcctcaagaggatgtgcggaaaatagtactggctactaat
attgctgagacaagtatcactatcaatgatattgttttcgttcttgactgtgggaaagca
aaggagtcttcctatgatgcattgaataacactccttgtctgcttccttcctggatttct
aaggtttctgctcaacaaagaagaggaagagctggccgcgttcaaccaggagaatgttat
cacctctatcctaggtgtgtatatgatgcttttgcagagtaccaattgccagaaattttg
agaacgcctttgcagtctatttgtctacaaatcaaaagtctgaaacttggaagcatatct
gactttctatctagggctttgcagtcgcctgagttattagcggttcaaaatgccattgaa
tatttaaaaatcattggagccttggatcagaatgaaaacttgactgttctaggtggatat
ttgactatgcttccagtggagcctaagctcggaaaaatgctcgttttaggtgctattttg
aattgcctggatccagtactaactgttgttgcaggtcttagtgtcagagatcctttcttg
atgccattggacaagaaggatcttgcagaggctgcaaaatctcagttttctggtgattat
agtgaccacctagcacttgtccgagcctatgagggctggaaagatgctgaaagagatctt
tctggatatgagtactgctggagaaattttctctcagtgcaatctatgaaagctattgat
tctcttcggaaggagttcttctccttgctcatggataccggccttgtcgatggcaaccca
accacctgcaatgcatggagccacgatgagcatctggttcgagcagttatttgcagtggc
ctctatcctggaatttgctccattgtgcacaatgagaagtcattttcattaaaaaccatg
gaggatggccaggtgcttctgcactctaactcggttaatgctcgagaatcaaaaatcccc
tatccatggctggttttcaatgagaagataaaagttaatagtgtttttctccgggattca
actgctgtttctgattcagtgctgcttctatttggcgggagcatctctagaggggatgct
gatgggcacttgaaaatgttgggaggatttctggaattctacatgcaaccttctgtagca
gaaatgtatcagagcttgaggagagagctcgatgagctgattcagaccaaactgctgaat
cccaggatggacatacacatgcaccatgagcttctctctgcagtgcgtttgttagtttca
gaggataattgtgatggcagatttgtgttcggttgccatttcttcaagtcctcaaaacca
actgtttttgctacccagccaaccttaatttcaaggggtgatagtggacctggaggtgat
aattccaagagtcagctccagacattgctcacccgggcaggatatgctgcaccatcgtac
aagacaaagcaattgaagaacaaccaatttcgcgccactgttgagttcaatggaatgcaa
attatgggacagccttgcaataacaagaagagtgcagaaaaagatgcagcggctgaagcc
ctgcagtggctggtgggtgggacccaaacaagccaggaatacattaatcacatgtcaatg
ttgctaaagaagagcaaaaaggatcattactaa
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