Populus nigra (Lombardy poplar): 133697154
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Entry
133697154 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133697154
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133697154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133697154
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133697154
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133697154
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133697154
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Gln-synt_C-ter
Motif
Other DBs
NCBI-GeneID:
133697154
NCBI-ProteinID:
XP_061975535
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All DBs
Position
6:complement(575319..579749)
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AA seq
661 aa
AA seq
DB search
MEPFFNSRRPRHHKQKGNTAPYNQQGFSANPSLTNSMQPQLGLVNPQIPIPFNNSNTHLR
NGQAMPNMPPLINQQHGLVSGPNDLAILQLQNQVNKLNALKMLMNQVNQLQGELFGPGFS
NLPQQINQNMGLLQNPMQNMMNPVMPMQMPMTSQVGSFNVPSSSHQVVGAQSPNFFVNQQ
VKPNQPNFVMPTTGANGSKQLSFENQQMQGNLSATQKNQNFVMPAVGTNGSNSLHVATQQ
VEGISPASQQSEKFVMPTMAANGPKPLPAATQQVQGNPFTSQQSQNLQPSAYNRWQGNPA
KNGQGSTPNSKQGIFSGKNFKNNPKREQSQSGHQKSEFHRMDNGKRKLGFSNKHGGKGKG
NERAAKFGRSDPSNQVTEQKRTHIYTEQEIKQWRESRRKHFPTKTNIEKKQTEKLIDSGV
VDKEANFRREQLKEILAKQAELGVEVAEIPPEYMLDSEKLGVEVAETPLSYLLDSEKLGV
EAAEIRPHHLLDSEKQEHGREDNRRSLTKKGRFWNKHDRRGRYKRKGRSDMQLGLENEDR
KPTLLEKLLCADIKRDKHRLLQVFRFMVANSFFKDWSDKPLKFPSVVVKEDGCKDEPQEE
KPSLVGEEESEVPNNTTVEDFGDRDDGDEHDAQVEPGNGSVMGKCDIVDEVYRVEEGEII
D
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggaacctttcttcaattcccgtcgtcctagacatcacaaacaaaagggcaacactgct
ccttataatcaacagggattttcagcaaatccttctttaacaaattcaatgcaacctcag
ctgggtttagtcaatcctcaaatcccaattccttttaataactcaaatacccatttaaga
aatggacaagccatgcctaatatgccacctttaatcaatcaacagcatggtttagtgagt
ggacctaatgatctggctatccttcagttacaaaatcaggtcaacaagttgaatgcttta
aagatgttgatgaatcaagtaaatcaattgcaaggagagctgtttggtcctggtttctcc
aatttgcctcaacaaatcaatcaaaatatgggtttgttgcaaaatccaatgcagaatatg
atgaaccctgttatgcctatgcaaatgccaatgacttctcaagttggttcctttaatgtc
ccttccagtagtcaccaagtggtaggtgctcaaagtccaaacttttttgtaaatcaacaa
gttaagccgaaccagccaaactttgtaatgccgacaactggtgcaaatggatcgaaacaa
ttgtcttttgaaaatcagcaaatgcaagggaacttgtctgcaacacagaaaaatcagaac
tttgtaatgcctgcggtgggtacaaatgggtcaaattcattgcatgttgcaactcagcaa
gtggaagggatctcgccagcatcacaacaaagtgagaaatttgtaatgcctacaatggct
gcaaatggaccaaagcctttgccagctgcaactcagcaagtgcaagggaacccatttaca
tctcagcaaagtcagaacttgcaaccctctgcttacaataggtggcagggcaatcctgct
aaaaatggccagggtagtactccaaattccaaacaaggaatcttttctggaaaaaacttc
aaaaataatccaaagagagagcaatcacaatcaggacatcagaaatccgagttccatcgc
atggataatggaaagagaaagcttgggttttctaataaacacggtggaaaagggaaaggc
aatgagagggcagcaaaatttggtcgctctgatccttcaaaccaagttacggaacagaaa
agaactcatatatacacggaacaagaaatcaaacaatggcgtgaatcacgcaggaagcac
ttcccaacaaaaaccaacatagagaagaagcagactgaaaagctaatagactctggggtc
gttgataaagaggccaactttcgtcgcgagcaactcaaggagattttggcaaagcaggct
gagctaggagttgaagttgctgaaataccaccagaatacatgttagattcggagaagtta
ggagttgaagttgcagaaacaccactgagctatctgttagattcagagaagctaggagtt
gaagctgcagaaatacgaccgcaccatctgttagattcagagaaacaagagcatggaagg
gaagataacagaaggtccttgactaagaaggggagattctggaacaagcatgatagaaga
ggaagatataagagaaaaggtcggtcagacatgcagcttggattagaaaacgaggatagg
aagccaacactgttggagaagcttctttgtgcagatataaagagggataagcaccggttg
ttgcaggtttttaggttcatggtggcgaactctttcttcaaggattggtcagataagcct
ttgaagtttccttcggtagtggttaaagaagatggttgcaaggatgagccacaggaagaa
aaaccttcacttgttggggaagaagagtctgaagttccgaacaatacaacagttgaagat
tttggtgatagagatgatggcgacgaacatgatgctcaagtggagccagggaatggttct
gtcatgggaaaatgtgatattgttgacgaagtttatagggttgaagaaggagaaatcatt
gactaa
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