Populus nigra (Lombardy poplar): 133697155
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Entry
133697155 CDS
T10372
Name
(RefSeq) vacuolar protein sorting-associated protein 36-like
KO
K12190
ESCRT-II complex subunit VPS36
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
133697155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133697155
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pnz04147
]
133697155
Membrane trafficking [BR:
pnz04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
133697155
Exosome [BR:
pnz04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
133697155
Exosomal proteins of colorectal cancer cells
133697155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
HTH_10
Motif
Other DBs
NCBI-GeneID:
133697155
NCBI-ProteinID:
XP_061975536
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All DBs
Position
6:579931..583965
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AA seq
446 aa
AA seq
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MSTATTSFFEPASVTSSGRPVLHQAEVECHLLSPLDLETEPTTTATTTINSLDFPALKSG
LGILTTHRLLWLPSNATTDSSSPISIPLSSVTHIFSPKKSIKSMFHSPRIRFQVSMHSRS
VVVTLVIRGKGDIDGFLTKFWDCWRGRAWEIGNDSGGGSSSGSVPASGSVSGGGLYSSDG
SVRLVGVSGILRKEQEMWESTDKSLQEAFHDLNALMRKAKEMVILAEKMRQKLLSGSSSQ
GSSGNDEEMGSKEEMQDWLLSVGIISPVTKESAGAMYHQQLSRQLADFVRIPLEKAGGMI
NLIDIYCLFNRARGTELISPEDLLQACSLWEKFDVPVMLRKFDSGVKVIQNKSHSDEEVF
ARIKNLVSKPEALRSGITASDAAMTLGIAPAMAKEHLLSAESKGLLCRDISPDGFRFFIN
LFPEINSDDIHMVKDHGIYSLWIKSW
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgcgaccaccagttttttcgaaccagcctccgtgaccagcagtggccgtcca
gtcctccaccaagccgaagtagaatgccacctcctctcacctttagaccttgaaaccgaa
cccaccaccaccgcgacaaccaccatcaattcacttgacttccctgcattaaaatcaggc
cttggaatcctcaccacacaccgcctcctttggcttccctctaatgctacgacagacagt
tcaagtccaatatcaatccctttgagttctgtaactcatatattttcaccaaaaaagtcg
atcaagtcaatgtttcactcaccccggatccggtttcaagtttctatgcattcaaggagt
gttgtggtgactttagtgatcagagggaagggagatattgatgggtttttgacaaagttt
tgggattgttggagaggaagggcttgggagattggtaatgatagtggcggtgggtcaagt
tcggggtctgttccggcttctgggtcagtttcgggtggtgggttatactcgagtgatggg
tcagtgaggctggtgggtgtgtctgggatattgaggaaagagcaggagatgtgggaaagt
actgataagagcttgcaagaggcttttcatgacttgaatgctcttatgagaaaggccaaa
gaaatggtcatcctagcagagaagatgaggcagaagcttttgtctggatcgagctctcaa
ggtagttctgggaatgatgaggaaatgggttccaaagaagagatgcaagattggctgctg
agtgttggtatcatatccccagtaacaaaagaatctgcaggtgccatgtatcatcaacaa
ctgtcccgtcagttggcagattttgtcagaattccgctagagaaagctggaggaatgatc
aatcttatagatatctattgcctcttcaatcgtgctcggggaacagaattgatctcacct
gaggatttgttgcaagcatgttctctttgggagaagtttgatgttccagtaatgcttcgg
aaatttgatagtggagtgaaggtcatccagaataagtcccatagtgatgaggaggttttt
gcaagaatcaaaaaccttgtatcaaagcctgaagccctgcggtctggaataactgctagt
gatgctgccatgacattgggtattgctccagctatggccaaggagcatcttctaagtgct
gagagcaaaggattgctatgcagggatataagccctgatggatttcgctttttcattaac
ctctttcctgaaatcaattctgatgatatacacatggtcaaggatcatgggatttattct
ctgtggataaaaagttggtag
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