Populus nigra (Lombardy poplar): 133697194
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Entry
133697194 CDS
T10372
Name
(RefSeq) endoribonuclease Dicer homolog 2-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133697194
microRNA pathway
RISC loading complex
133697194
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GFIT
Other DBs
NCBI-GeneID:
133697194
NCBI-ProteinID:
XP_061975589
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Position
6:complement(4742439..4753321)
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AA seq
1414 aa
AA seq
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MMEPVSVDIDTTQQLPADPLPFARSYQLEALEQALKQNTIVFLETGSGKTLIATMLLRSY
AHLLRKPSRFIAVFLVPEVFLVRQQAGVVRMHTDLNVGMYWGDMGIDFSHAATWKQEIDK
HEVLVMTHQILLNGLRQGYFKLDFIKVLIFDECHHARGNHPYACIMTEFFHRELRSGHHD
LPRIFGMTASLIKSKGANSESYYRQQICELENILNSKVYTCASETVLAEFIPFPAAEFLF
YEPMKIPDGVYACLEEELGNLKAKHELLLKQLDLSESAAESVHSKISKVHSALMFCSGEL
GVWLAFQCVLMKQAARFLSHSDTDSDVIAWGKVDVSGETIVKKFCWDASLVISNCFSAEC
CIGDNTEADVGAGLITAKVLCLIKTLLQYRDLKDIRCIVFVERVITAVVLESLLRELLPK
HSSWTTKYIAGNNSGLQSQTRQMQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRF
DPPSSVSSFIQSRGRARMQNSDYLLMVKREDSTTHSRLENYLSSSEIMRRQSLRRSSTSC
SAPQSELYEDEFYSVEGTEAVVTLSSSVSLIYFYCSRLPSDGYFKPTPICTIDKEKETCT
LHLPKSSPIQNICVQGNIKNLKQKACLEACKQLHLIGALTDNLVPDVVEEEAVAQEIGNE
RYDDEQPIYLPPELASQGPRNLKTKYYCYLIELNQKFDYGVPVHDIVLVMRTELESDVLS
SMGFELEVERGLLAVSLRYIGDIYLDQVPVLLCRRFQITLFEVLIHREVNKLEEVLKGLE
LGTGVVMDYFLLPAIRSRSQPSIDWEPISSVLFSYKNEDHFNCSSKGNAHVVHTKGGPVC
TCVLQNSLVCTPHNGNVYFITGASEDLNGRSLLKLRDGSAITYKEHYAKRHSIQLRFDQE
PLLEGRFIFPVHNFLNRCRTKKEKESKNAHVDLPPELCDIILSPVSISTLYSYTFIPSIM
HRLESLLIAVNLKKMHSDHCMQNVDIPAMKVLEAITTKKCQEKFHLESLETLGDSFLKYA
ASQQLFKLYQNHHEGLLSMKKEKIISNAALCRRGCDHKLPGFIRNESFDPKLWMVPGDKC
GSDLLSEEPLSECRKIYVRGRRKVKGKTVADVVEALIGAYLSTGGEVLALFFMDWIGIKV
DFMIVPYERHFQLQAEKFVNVRYLESLLNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLE
FLGDAVLDYLITMHLYKEYPGMSPGLLTDLRSASVNNDCYAQSAVRGDLHKHILHTSQDL
HKHIVETAEIFQKSSLGSTFGWESETSFPKVLGDVIESLAGAILVDSGYNKEIVFQSIRP
LLEPLITPATVRLHPARELSELCQKQHFDYKKSVVSYNGRNASITIVVGANGVIFKHTAT
AADRKTAKKLASKEVLKSLKESNFASSSAPSKID
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgatggagcctgttagcgtggatatagacacaacccaacagctccctgctgatcctctc
ccatttgctagaagttatcaattggaggctttggagcaggcgctaaagcagaacacaatt
gtctttttggagactggttctggcaagactttgattgccaccatgctactgcgcagttac
gcccatcttcttcgcaagccttcacgttttattgctgttttcctggttcctgaagttttc
ctggttcgccaacaagctggagttgtgagaatgcataccgacttgaatgtgggcatgtac
tggggagacatgggaattgacttctcgcatgctgctacatggaagcaggaaatagacaag
catgaggtgcttgttatgacacatcaaattttgctgaacggcttgaggcagggctatttc
aagctagatttcataaaggtgttgatatttgatgaatgtcatcatgccaggggcaatcac
ccttatgcatgcatcatgacggagttctttcatcgtgagttaaggtctggtcaccatgat
cttcctaggatttttgggatgacagcttctctcataaagtcaaagggtgcaaactcagaa
tcatactacaggcagcagatttgtgaactggagaatattttgaattcaaaggtatacacc
tgtgctagtgagactgtgcttgccgaatttataccattcccggccgcagaattcttattt
tatgagcccatgaagatccctgatggtgtatatgcttgcttggaagaagaattggggaat
ttaaaagcaaagcatgaattattgctcaagcaattggatctcagtgagtctgctgcagaa
tctgtacacagtaaaatatcaaaagtacattcagctttgatgttttgttcaggggaactt
ggtgtttggttggcttttcagtgtgtgttgatgaaacaggctgcacggttcttatcacac
agtgacactgatagtgacgttattgcatggggtaaagtagacgtgtctggtgagacaatt
gttaagaagttttgctgggatgcgtctttggtgatttctaattgcttttcagctgaatgc
tgtattggtgataacactgaggctgatgtgggcgcggggcttataactgcaaaagttctc
tgccttattaagacacttcttcagtacagggatttaaaggacataagatgtatagttttt
gtggaaagggtcattactgccgttgtccttgaatctctattgagggagttgcttcctaaa
catagcagctggacgactaaatacatagcaggaaataattcagggttgcaatcccagaca
cgccaaatgcaaaatgaaattgtggaagaatttcgtaaaggcatggtgaacatcattgtt
gcaacatcaatccttgaggaaggattagatgtacaaagttgcaacttggtgattagattt
gatcctccatcctcagtcagcagtttcatacagtcccgaggtcgtgctaggatgcagaat
tcagactacttattaatggtgaaaagagaggattcaaccacacattctcgactagagaac
tatctttctagcagtgaaataatgagaaggcagtccctgcgccgctcttccacttcttgt
tcagctccgcagagtgaactgtatgaagatgagttctatagtgttgaaggcacagaggca
gttgtaactcttagttcaagcgttagtttgatttacttttattgctcacgtcttccttct
gatgggtattttaaaccaactcctatatgtactatagacaaggagaaggagacttgcaca
ctacatcttccaaaaagctctcctatacaaaatatttgtgtgcagggaaatattaaaaat
ctgaagcagaaggcatgtcttgaagcttgcaagcaactccatttaattggtgctttaaca
gacaatcttgttcctgatgttgttgaggaagaagctgttgctcaagaaattgggaatgaa
cggtatgatgatgaacagcccatttatttgccacctgagctggccagtcaaggtccacgg
aacttgaagacaaagtactactgctacttaattgaattaaatcagaaatttgattatggt
gttcctgtccatgatattgtgcttgtcatgaggactgagcttgaatctgatgtcttaagt
agcatgggttttgaattagaagttgagaggggattattggcagtgagcttgaggtatatt
ggagatatttatcttgatcaagtgccggttctcttatgtaggaggtttcagattacgctt
ttcgaagttcttatacatcgtgaagtgaacaaattggaagaagtcttgaaaggattggag
ttagggacaggtgttgtgatggactattttctacttccagctatcaggtcacgctcgcaa
ccttccattgactgggaacctattagttctgtcctgttttcatataaaaacgaggaccac
ttcaactgttcttcgaagggcaatgcccatgttgtccataccaaaggtggtccagtttgc
acatgtgtgcttcagaattccttggtctgcaccccccacaatggtaatgtctatttcatc
acgggtgcttctgaggatttgaatggaaggtcgcttttaaagctgagggatggaagtgca
atcacttacaaggagcactatgcaaagcggcatagcatccaattgcgttttgatcaagaa
ccattacttgaagggagatttatttttccagtgcacaattttcttaacagatgcagaaca
aaaaaggagaaagaatcgaagaatgcacatgtagatttgcctcctgaactttgtgacata
attttatctccagtatcaatcagcactctttattcttatacatttatcccatcaataatg
catcgactagagtccctgcttattgctgtcaacttaaagaagatgcattcggatcattgc
atgcaaaatgttgatattccagcgatgaaggtattggaagcaattaccacaaagaagtgc
caagagaaatttcatttggaatccttagaaactctcggagattcttttcttaaatatgct
gcaagccagcagctatttaaactttatcaaaatcatcatgagggccttcttagtatgaag
aaggaaaaaattatttctaatgctgcactctgtaggcgtggatgtgaccacaaacttccg
gggtttatccgcaatgaatcttttgatccaaaactctggatggttcctggtgacaagtgt
ggaagcgatttgttaagtgaggagccactttctgagtgcagaaaaatttacgtcagggga
agaagaaaggtaaaaggtaagacagttgctgatgttgtcgaggcactcattggggcatac
cttagtacaggtggtgaagtactggccttatttttcatggattggattggtataaaggtg
gatttcatgattgtaccgtacgagaggcacttccaattgcaggcagagaagtttgttaat
gttcgctacttagagtcactgttaaactattcatttcgtgacccttctctattagtagag
gcattgacccatggttcttacatgcttcctgagatcccaagttgttatcagcgactggaa
tttcttggagacgctgtgctagattatctcatcacgatgcatttgtacaaggaatatccc
gggatgtcaccaggactgttaactgacctgaggtctgcttctgtaaacaatgactgttat
gcacaatcagctgttaggggagacttgcacaaacacattcttcatacctcacaagacctt
cacaagcatatagtcgaaactgctgaaatttttcagaaatcttctttaggatccacattc
ggatgggaatctgagacatctttccccaaggtacttggagatgttatagagtctctagca
ggggctattcttgtagattcaggatacaacaaggagatagtctttcaaagtataagacca
cttttggagcctttaattacgcctgcgacagtaagactccatcctgcaagagaattgagc
gaattatgtcaaaagcaacattttgattacaagaaatccgttgtttcctacaacggcagg
aatgcttccattacaatagtggttggggctaatggtgtgatattcaaacacacagccaca
gctgcagataggaagacagccaaaaaattagcttctaaagaagtcttgaagtccctgaag
gaaagtaattttgcgtctagtagtgccccaagcaaaattgattaa
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