Populus nigra (Lombardy poplar): 133697481
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Entry
133697481 CDS
T10372
Name
(RefSeq) DNA polymerase lambda isoform X1
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03410
Base excision repair
pnz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
133697481
03450 Non-homologous end-joining
133697481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133697481
Enzymes [BR:
pnz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
133697481
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
133697481
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
133697481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
DNA_pol_B_thumb
HHH_8
BRCT
HHH_5
IMS_HHH_1
NTP_transf_2
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
133697481
NCBI-ProteinID:
XP_061976043
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Position
6:complement(10817673..10826188)
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AA seq
538 aa
AA seq
DB search
MAPKRKKSPSIDPQGIFSGMVVFLVETGVQSRRLQIWKQKLVQMGATTEERLSKKVTHVF
AINSQALLQQLDGQLLKRFKPRVLLYQWLEDSLRSGEKVSEDQYHLLVDMEGENTKDKSL
VLKLVNENTSSADELSPHNEKIKSDVKKFKSDAENKGSFEVPNSPGSSDSSPLSQTLTNP
IPSSTLHSDLSLPYSPPDLNRSITEIFGKLINIYRALGDDRRSFSYYKAIPVVEKLPFKI
ESADQVKDLPGIGKSMQDHKIMGAIGCMQIQEIVTTGKLSKLEHFETDEKVRTISLFGEV
WGIGPATALKFYEKGHRTLEDLKNEDSLTHSQKLGLKYFDDIKTRIPRHEVQEMELLLQK
TGEEILPGVDILCGGSYRRGKASCGDLDIVITHPDGKSHKGFLTRYVKRLKDMKFLREDL
IFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLVAWTGNDVLNRRLR
LLAESKGYRLDDTGLFPATQASGGKRGARASASLRFDNEKEVFDFLGFPWLEPHQRNQ
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaaagcgaaagaaaagtccttcaatcgatccccagggaattttctctggaatg
gttgtgtttttggtcgaaactggagtccagtcacgtcgcttacagatttggaagcagaag
ctggtccaaatgggtgctactactgaggagcgcttatcaaagaaagtcactcatgttttt
gctattaattcacaggcccttctccaacaattggatggacaacttctaaaacgctttaaa
ccaagggttctcctctatcaatggctagaggacagtttgagatcaggggagaaagtttcc
gaggatcaatatcatcttctagttgacatggaaggagagaatacaaaagacaagtctttg
gttttgaaattagtcaatgagaacacttccagtgccgatgaactgtcacctcacaatgaa
aagatcaaatctgatgtgaagaaattcaaatcagatgcagaaaataaaggttcgttcgag
gtgccaaatagtcctggaagttctgacagctcacctctctcacaaacccttaccaatcca
ataccctccagtactctgcattcggatttatctttgccttacagtccacctgatttaaac
aggagcataactgagatatttggaaaactcatcaacatatacagggctttgggtgacgat
agaaggtcattcagctattacaaggctattcctgttgttgagaagttgccatttaaaatt
gagagtgcagaccaggtcaaagatttgcctggcataggaaagtcaatgcaggatcataag
attatgggtgccattgggtgtatgcagatccaggagatagtcactactgggaaattatcc
aagttggagcactttgagacagatgaaaaggtacggacgattagtttatttggggaagtt
tggggtattggtccagccacggccctaaaattttatgagaagggtcatcgcacgctagag
gatctgaagaatgaagattcactgacacattcacagaagttaggattaaaatattttgat
gatattaagacgaggattccacgccatgaggttcaagaaatggaactattgctacagaaa
actggtgaagagattttacctggggtcgacattttatgtggaggatcatatagacgcgga
aaagcttcttgtggcgatttggacatcgtgattacgcaccctgatgggaaaagtcataaa
ggttttctaacaagatatgtgaagcgtttaaaggatatgaaattcctaagagaggatttg
attttcagtactcacagcgaggagggtactgattcaggtgttgacacatatttcgggctt
tgcacatatcctgggcgagaactgcggcaccgaatagactttaaggtttatccaagggac
atttatgcttttggtctagtagcatggacagggaatgatgtattaaacaggaggctgaga
ctgctagcagaatccaaaggatatcggcttgatgatactggattatttccagctacccag
gcttcaggtggcaagcgaggtgcaagagctagtgcaagtctgagatttgacaatgaaaag
gaggtgtttgatttcctaggctttccttggcttgaaccgcatcaaagaaatcaatga
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