Populus nigra (Lombardy poplar): 133697777
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Entry
133697777 CDS
T10372
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133697777
Spliceosome [BR:
pnz03041
]
Complex C
Other components
Step II factors
133697777
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GFIT
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NCBI-GeneID:
133697777
NCBI-ProteinID:
XP_061976528
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Position
6:5383079..5392634
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AA seq
1284 aa
AA seq
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MDIDKSVVTMEAEQSNGGAGGLFVPKKEKLEFRPPERKSLLGLDVLAIAKRGGSDANGGG
FKAPKERATTSFMASIDEEEEATESSGLDEVENDGGSESGVRRNVNRRYREASSSEKSAV
TREGSHSNTHGTPRSRENLSSDDCATYTGSSRSVKCRSPGSERGDRGRDRKGLKDDARDE
SRRGRDRHSSDREERYRGREARGRYEQEYDGDYGRKRSRYEGSRRTPGRSDWDDGRWEWE
ETPRQDSYNTSRRHHPSPSPMFVGASPDARLVSPWMGGHTPRSSGSAASPWDHISPSPVP
IRASGSSFRSSTSKYGGRSHQLTFSTTSAPSLEDGEGDKTYSSEEHNHEITESMHQEMEY
NSDRAWYDREEGNTMFDADSSSFFLGDNASFQKKEAELAKRLVRRDGTKMSLAQSKKLSQ
LSADNAQWEDRQLMRSGTVRGTEVQTEFDDEEEHKVILLVHDTKPPFLDGRVVFTKQAEP
IMPLKDPTSDMAIISRKGSALVRETHEKQSMNKSRQRFWELAGSKLGDILGVEKTAEQID
ADTAAVGEEGEIDFKEDAKFAQHMKKGEAVSDFAKSKTLSEQRQYLPIYSVRDELLQVIR
ENQVIVVVGETGSGKTTQLTQYLHEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMDTELG
DKIGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDSDLDKYRVIVMDEAHERSLSTDVLFG
ILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNILYSKSPCEDYVEG
AVKQAMTIHITSPPGDILIFMTGQDEIEAACHALAERMEQLTSSSKKAVPKLLILPIYSQ
LPADLQAKIFQNAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPKMGMDALQ
VFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSL
KIENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLI
GEQLECINEVLTIVSMLSVPSVFFRPKDRVEESDAAREKFFVPESDHLTLLNVYLQWKEH
QYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCGYDWDVVRKAICSAYFHNS
ARLKGVGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELILTTKEYMQCATAVEPQWL
AELGPMFFSVKDSDTSMLEHKRKQKEEKTAMEEEMENLRKVQAETDRESREKEREKRAKR
QQQVSMPGLKKGSSTYLRPKKFGL
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atggatatagacaagtcagtagttacaatggaagcagagcagagcaatggtggtgccgga
ggcttatttgttcctaaaaaggagaaactcgaatttcggcctcctgaaagaaaatcactt
ttaggtttagatgtacttgcgattgcgaaacgaggaggatctgatgcaaatggaggagga
tttaaggctccaaaggaaagagctacaacttcttttatggcgtcgattgatgaagaggaa
gaggctactgaatcttctggattagatgaagtagaaaacgatggtggaagtgagagtggt
gtacgcagaaatgtaaataggcgatatcgggaagcctcctctagcgagaaaagtgctgtg
actcgagagggatcgcatagtaacacacatggaactcctcgttctagagaaaatctgtca
tcagatgattgtgctacttataccgggagctcccggagtgttaagtgtaggagtcctggg
agtgagagaggtgaccgaggtagggatagaaagggccttaaagatgatgctagggatgaa
agcaggagggggagagacaggcacagcagtgatcgtgaagaacggtatcgtggaagggaa
gcacgtggacggtatgaacaggagtatgatggagactatggaagaaaacgaagtcggtat
gaaggttcaaggaggacaccaggcaggtctgattgggatgatgggagatgggaatgggaa
gaaacacctcggcaggatagttataatactagccgacgccaccacccttccccatcacca
atgtttgttggtgcctcacctgatgcacgattagtttccccatggatgggtggccacaca
cctcgcagtagtggttctgctgcttctccttgggatcacatttctccctcgccagttcca
atacgtgcttctggatcatcatttaggtcttccacttctaaatatggtgggaggtcccat
caacttactttttccaccacaagtgcgccatcattggaggatggtgaaggagataaaact
tattcatccgaggagcacaatcatgagattactgaaagtatgcatcaagagatggaatac
aattctgaccgagcctggtacgatagagaagaaggcaatacaatgttcgatgctgatagc
tcatcattcttccttggggataacgcctcattccagaaaaaggaggcagagttggccaaa
agactggttcgaagagatggaactaaaatgtcacttgctcaaagcaaaaagttatctcag
cttagtgctgataatgcccaatgggaggatcggcaacttatgagatctgggacagttaga
ggtaccgaagtgcagactgagtttgatgatgaggaagagcacaaggttattcttcttgta
catgacacaaagcctcctttcctggatggaagagttgtttttaccaaacaagcggagcca
ataatgcccctaaaagatcccacctcagatatggccattatttcaaggaaaggatctgct
ctggtcagagaaactcatgagaagcaaagcatgaataaatcacgtcagcggttttgggag
cttgccggctcaaaactcggtgatattcttggtgtagagaaaactgctgaacagattgat
gctgacactgcagctgttggcgaggaaggtgaaattgattttaaggaagatgcaaaattt
gcacagcatatgaaaaagggggaagctgtaagtgattttgcaaagtcaaaaactctatct
gagcagcggcaatatctacctatatattcagtgcgagatgagttgttgcaggtcattcgt
gaaaatcaagtgatagttgttgttggagagactggttcaggaaagacaactcaactgaca
cagtatctccatgaagatgggtatacaacaaatgggatagttggttgcacccaaccaagg
cgtgttgcagccatgagtgttgcaaaaagagttagcgaagagatggacactgaattgggg
gataaaataggttatgccattcgttttgaggatgtgaccgggccaaatacaataattaag
tacatgactgatggagtactcttgcgtgagacactgaaagattctgaccttgataagtat
cgtgtcattgtcatggatgaagcacatgagagatcattaagcactgatgtgttgtttggg
atcttgaaaaaggtggttgcccagcgtcgtgacttcaaactcattgtgacatctgcaact
ctaaatgctcaaaaattttcaaatttctttgggagtgtacctattttccacatccctggg
agaacatttccagtaaatatcttgtacagtaaaagtccttgtgaagattatgttgaaggt
gcagtgaagcaggccatgactatccacattaccagtcctcctggcgacattctcattttc
atgactggccaagacgagattgaggcggcctgtcatgctcttgcagagcgcatggaacag
cttacctcctcctccaagaaagcagtgcctaaactcttaatactacccatatactcccaa
cttccagctgatttacaagcgaagatattccaaaatgctgaagatggggcccgcaaatgc
attgttgccaccaacattgctgagacttctttgactgtggatggaattttttatgtcatt
gacacgggttatggaaaaatgaaagtttacaacccaaagatgggtatggatgctctccaa
gttttccctgttagtcgtgctgctgcagatcagcgtgctgggcgtgctggtagaactggt
ccgggcacatgttataggctttatacagagagtgcttacctaaatgaaatgcttcccagt
ccagttccagagatccagcggacaaatcttggcaatgtggttttgttgctcaagtcactt
aaaattgaaaatttgctggactttgatttcatggacccaccaccacaggacaacatcctt
aattctatgtaccagttgtgggtcttgggtgctctaaacaatgttggtgcccttactgat
cttggctggaaaatggtggagttcccattggatccccctctagctaagatgctcttgata
ggtgaacagttagagtgtataaatgaggttttgacaattgtgtcgatgctttcagtgcca
tcagtgtttttccggcccaaggatagagtggaggagagtgatgctgcaagagaaaagttc
tttgtgccagagtccgaccacttgactcttcttaatgtttacttgcagtggaaagagcac
cagtaccggggagattggtgtaatgatcattttttgcatgtcaaaggattacgaaaggct
agagaggttagatcccagctgctagacattctcaagacattaaaaatcccgctaacatcc
tgtgggtatgattgggacgttgtacggaaagccatctgctctgcatatttccacaattca
gcgagattaaagggtgtcggggagtatgttaattgccggaacggaatgccttgtcattta
cacccaagcagtgctctttatggtttaggctacactccagattatgtagtttatcatgaa
ttgatcttgacaacaaaggagtacatgcaatgcgccactgcagtggagccccagtggttg
gctgagctgggaccaatgtttttctctgtgaaagattcagacacatcaatgctggagcac
aagcgaaagcagaaagaagagaaaacagcaatggaagaggaaatggagaatttgaggaag
gtgcaagccgagacggacagagaaagtagggagaaggaaagggagaagagggcaaagcgg
cagcaacaagtctcaatgcctgggttgaagaaaggctcttccacatacttgagaccgaag
aagttcggtttgtaa
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