Populus nigra (Lombardy poplar): 133697845
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Entry
133697845 CDS
T10372
Name
(RefSeq) long chain acyl-CoA synthetase 6, peroxisomal-like
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz00061
Fatty acid biosynthesis
pnz00071
Fatty acid degradation
pnz01100
Metabolic pathways
pnz01212
Fatty acid metabolism
pnz04146
Peroxisome
Module
pnz_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
133697845
00071 Fatty acid degradation
133697845
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
133697845
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pnz01004
]
133697845
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pnz04147
]
133697845
Enzymes [BR:
pnz01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
133697845
Lipid biosynthesis proteins [BR:
pnz01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
133697845
Exosome [BR:
pnz04147
]
Exosomal proteins
Exosomal proteins of breast milk
133697845
Exosomal proteins of breast cancer cells
133697845
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
133697845
NCBI-ProteinID:
XP_061976638
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Position
6:11159849..11169428
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AA seq
703 aa
AA seq
DB search
MDSAMTAPDTAQRRIKAIHSHLITAAAHDDSPPQLRHNPTAGEFFSEQGYSVVLPEKLQT
GKWNVYRSARAPLKLVSRFPDHPEIGTLHDNFARSVETFRDYKYLGTRIRVDGTVGDYKW
MTFGEAGTARTEIGSGLIHHGIPKGSTIGIYFINRPEWMIVDHACSAYSYISVPLYDTLG
PDAVKYIVNHAVVHAIFCVPQTLNMLLSFLSEIPSARLIVVVGGIDDQMPSLPSSTGVQV
VTFSKLLSQGRSSLQPFHPPKPEDIATICYTSGTTGTPKGVVLTHGNFIASVAGISLSTS
YSTSDIFISYLPLAHIYERVNQVMTVYCGVAVGFYQGDNMKLMDDMAALRPTIFCSVPRL
YNRIYAGIMNAVKASGGLRERLFNAAYNAKKQALMNGKNPSPMWDRLVFNKIKDRLGGRV
RLIVSGASPLSPDVLEFLRICFGGRIIEGYGMTETTSPISSMDEGDNLNGHVGSPSPACE
VKLVDVPEMNYTSDDKPYPRGEICIRGPIVFQGYYKDEEQTREVINEDGWFHSGDVGLWL
PGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFIAQCFVYGDSLNSSLVAVVSVDH
DVLKAWAASEGNKYENLAQLCNDPRVRAAILADMDAVGREAQLRGFEFVKAVTLVLEQFT
VENGLLTPTFKIKRPQAKAYYEKAISNMYAELAASDPSSKKVL
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggactcggcgatgacagctcccgatacagctcaacgtcgcattaaagctattcacagc
cacctcatcaccgccgctgcccatgatgattctccgccccaactccgtcacaatcccacc
gctggagagttcttctctgagcaggggtacagcgttgtgcttccagagaaattgcaaaca
ggaaagtggaatgtgtacaggtctgctcgcgcccctttaaagctcgtgagtagatttcct
gatcatcctgaaattggtacattgcatgataattttgcgcgctcggttgaaactttccgg
gactacaaatatctgggcacgcgaattcgtgttgatggaacagttggagactacaaatgg
atgacgtttggagaagcaggtactgcacgaactgagataggttctggcttaatacaccat
ggaatacctaagggatctactattggaatatattttatcaacaggccagaatggatgatt
gttgaccatgcgtgctctgcatactcttacatatccgtacctttatatgacacactcggt
cctgatgctgtcaagtatattgtaaatcatgctgttgtacatgctatattttgtgtgcct
caaacattgaatatgttattgagtttcttgtctgagattccatctgcacgtctaattgtg
gtggttggaggaatagatgatcaaatgccatctcttccatcgtcaactggagttcaggtt
gtgacattttcaaaactgctgagtcagggtcgcagtagcctgcagccctttcacccgcca
aagcctgaggatattgctaccatttgctacacaagtggtacaactggaacaccaaaggga
gttgtattgacccatggaaactttattgcaagcgttgctgggatctcgctttctacttca
tacagcacatcagatattttcatttcatatttgcctttggcgcacatttatgaacgggta
aaccaggtcatgacggtttattgtggagttgctgttggattctaccagggggataatatg
aaactaatggatgatatggctgctctacgacccactatattctgcagtgttcctcggctc
tacaatagaatatatgcaggtattatgaatgctgtaaaggcatctggtgggttaagggag
aggttattcaatgctgcttataatgctaagaagcaagcactaatgaatggcaagaatcca
tctccaatgtgggacagactggtgttcaataagattaaggatagacttggagggcgagtt
cgtttaattgtgtcaggtgcttcaccgctgtctcctgatgtgttggagtttttgaggatc
tgttttggtgggcggataattgaagggtatggaatgactgagacgacttctcctatatct
tccatggatgagggtgacaacctcaatggtcatgttggttctcctagtccagcttgtgaa
gtaaagcttgtggatgttccagaaatgaactacacatctgatgataaaccatatcctcgt
ggtgaaatctgtataaggggtccaattgttttccaaggctattacaaagatgaagaacaa
acgagagaagtaatcaatgaagatggatggtttcattctggggatgtaggattatggcta
cctggaggccgtctaaagattattgatagaaagaagaacatttttaagctggcacaagga
gagtacatagctccggagaaaattgagaatgtttatgctaaatgcaagtttattgcccag
tgctttgtctatggggacagcctaaattcttctttggtagctgttgtttcagtagaccat
gatgtgttgaaagcatgggctgcttctgaaggcaataagtatgaaaatttagcacaactg
tgcaatgatcctagagttagggctgctatacttgcagacatggatgctgtcggaagggaa
gctcagctgcgaggttttgaatttgtaaaagctgtgacactggtgctagaacaatttaca
gtggaaaatggtcttctgaccccaacatttaagattaagagacctcaggcaaaggcatac
tacgagaaagcaatatcaaatatgtatgcagaactggctgcatctgatccctcttctaag
aaggtgttgtga
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