Populus nigra (Lombardy poplar): 133697924
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Entry
133697924 CDS
T10372
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133697924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133697924
03012 Translation factors [BR:
pnz03012
]
133697924
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133697924
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
133697924
Translation factors [BR:
pnz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
133697924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
T2SSE
AAA_19
PhoH
AAA_16
Myosin_head
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
133697924
NCBI-ProteinID:
XP_061976736
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All DBs
Position
6:complement(599935..609133)
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AA seq
1154 aa
AA seq
DB search
MQNSKLILRSFLLGSCCTSTKKSVSNTIFSNKKNNPLFGLPFFLLNSNETSFLVAKRRGF
CGYAVEQFSDDEYECDFESHKASSSVANVDEWKWKLSLLLRSETDQEIVSKDRKDRRDYE
QISNLTRRMGLYSELYGKVVVASKVPLPNYRSDLDDKRPQREVVIPLSLQRRVEGLLQEH
LDRAQLKAENVGGSADDAKSINQTGDISLDENKDSFLDRSVMERVLQRRSLRMRNMQRAW
QESPEGRKMMDFRKSLPAFKEKERLLQAIAKNQVIVISGETGCGKTTQLPQYILESEIES
GRGAFCSIICTQPRRISAMSVADRVSAERGEPLGEAVGYKVRLEGVKGKNTHLLFCTSGI
LLRRLLSDHNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRQDLRLILMSATLNAELF
SNYFGGAPAIHIPGFTYPVRTQFLEDVLELTGYKLTSFNQIDDYGQEKMWKTQRQLVPRK
RKNQITTLVEDALNKSSFENYSSRARDSLACWMPDCIGFNLIEAVLCHICRKERPGAVLV
FMTGWEDISSLRDQLKAHPLLGDPNRVLLVTCHGSMATSEQKLIFEKPPPNVRKVVLATN
MAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRKGRAGRVQPGECY
HLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPESLAVQNAIG
FLKMIGALDEKENLTNLGKYLTMLPVDPKLGKMLIMGAIFHCFDPVLTIVSGLSVRDPFL
LPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKEAEREGSAYEYCWRNFLSAQTLQAI
HSLRKQFNFILKDTGLVEEDASNNNKLSHNQSLVRAIICSGLYPGIASVVHRETSMSFKT
MDDGQVFLYANSVNARYETIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGALACGV
QAGHLKMLDGYIDFFMDHNLAECFLKLKEELDKLLQKKLQDPNLDILKEGKYLMLAVQEL
VSGDQCEGRFVFGRESRKPKIINDNDRFTKDGANPKSLLQTLLMRSGHSPPKYKTKHLKT
NEFRALVEFKGMQFVGKPKRNKQLAEGDAAIEALAWLTHTSNYNQNEHDDSQPDVTDNML
KLLGKRRRSKRHSG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattcaaagctaatactaagaagtttccttctgggatcttgctgcacctccacc
aagaagtcagtttccaataccatcttcagcaataaaaaaaacaaccctttatttggtttg
cctttttttctcctgaattctaatgaaaccagctttttagtcgccaaaaggcgtggtttt
tgcgggtatgcagtagagcagttctctgatgatgagtatgagtgtgattttgaaagccac
aaggcttcttcgtcggtggccaatgttgatgaatggaaatggaaactcagtttgctattg
cgtagtgaaacagaccaagagattgtttctaaagatagaaaagacaggagggactatgag
cagatatcaaatcttactagaagaatgggactttatagtgaactgtatggaaaagtggtg
gttgcaagcaaggttcctctacctaactacaggtctgatttggatgataagcggccacaa
agggaggtggttatcccactaagtttgcaaaggagggttgagggtttacttcaggagcat
cttgatagagctcaattaaaggctgaaaatgttggtggtagtgcagatgatgccaagtcc
atcaatcagactggagatataagtttagatgagaataaggattctttcctagaccgttct
gtgatggaaagggttcttcagaggaggagtttgcggatgcgtaacatgcaaagagcttgg
caggaatcacctgagggcagaaaaatgatggacttcaggaaatctctaccagctttcaag
gaaaaggagaggttactccaagcaatagcaaagaatcaggtcatagtaatatctggagag
actggatgcggtaaaaccactcaactccctcaatatattctggagtcggaaatagaatct
gggcgtggagcattctgtagcataatttgcactcagcctcgaagaatatctgctatgtct
gttgcagatagagtgtctgcagagagaggagagcctcttggtgaagcagttggttataaa
gttcgactagagggtgtgaaaggaaaaaacacccatctgcttttttgtaccagtggaatt
ttactccgacgcctgttaagtgaccacaacttgaacggcataacccatgtttttgttgat
gaaattcatgagcgaggcatgaatgaagacttcctattgattgtgctcaaggatcttctt
ccacgtcgtcaagacttgagattgattttaatgagtgctactttgaatgcggaactcttt
tccaattattttggaggagcacctgctattcatattccgggctttacatatccagtgagg
acacaatttttagaagatgtactagaattgactggatataagttgacttctttcaatcaa
attgatgattatggccaagagaaaatgtggaaaacacagaggcagctggtaccgcggaaa
aggaaaaaccagatcaccactcttgttgaggatgctcttaataaatcaagttttgagaat
tatagttccagagcacgtgactctctggcatgctggatgcctgattgcataggatttaac
cttattgaagcagttttgtgccatatatgtcggaaggaaagaccaggtgctgtcttagtg
ttcatgactggttgggaggatattagctctttgagggatcaacttaaagctcatcctctt
cttggtgatcctaacagagttctgcttgtaacttgccatggttctatggcaacctctgaa
cagaaactgatatttgagaaacctcctcctaatgtacgtaaagtagttcttgcaacaaac
atggcagaggcaagtattacaatcaatgatatagtttttgttgtggattgtgggaaagca
aaagagaccacttacgatgctttaaacaatacgccctgcctgctaccttcttggatatca
aaagcatctgcacgacaaagaaagggtagggctggccgagtgcagccaggcgaatgttac
cacctatacccaagatgtgtatatgaagcttttgctgaatatcaacttcctgaacttttg
aggactcccctgaactctctttgcttgcaaataaagagtttgcaggttggaagcataggg
gaattcttgtcagctgctctccagccaccagaatcattggctgttcaaaatgccattggt
tttctgaagatgattggagcattggatgagaaggagaatctgacaaatcttgggaagtat
ttgacaatgcttccagtagatcccaagctgggtaaaatgttaataatgggtgctatcttt
cattgctttgatcctgtgttaacaatagtgtccgggctcagtgtcagggatcctttcctt
ctgccacaggacaaaaaggatttagctgggacagcaaaatctagattttctgcaaaagac
tacagtgatcatatggctcttgtccgtgcatatgaaggatggaaagaagctgaaagagaa
gggtcagcgtatgagtattgctggagaaatttcctatctgcacaaactttgcaggccatc
cattctctgaggaagcagtttaacttcattttaaaagataccggcttggtagaagaagat
gcaagcaacaacaacaaattaagtcacaaccaatcattggttcgtgcaattatatgctct
ggcctctatcctggaattgcatcagtggtgcatagagaaacatccatgtctttcaaaaca
atggacgatggccaagtttttctatatgctaattctgtgaatgcacgttatgaaacaatt
ccttatccatggctggtctttggtgaaaaagtaaaggtcaacacagttttcatacgtgat
tccactggtgtatctgattcaatactgatcctttttggtggtgcccttgcttgtggggta
caggctggacatctgaaaatgttggatggatatattgatttcttcatggatcataatttg
gcagagtgcttcttgaagcttaaagaagaacttgataagctccttcagaagaagcttcaa
gatcctaaccttgacatactcaaggaaggaaaatacctcatgcttgctgttcaagagctg
gtatcaggagatcaatgtgaaggaagatttgtatttggtcgcgaaagcaggaagcctaag
ataattaatgataatgacagatttacaaaagatggagcaaatccgaaaagtttgctacaa
acactactgatgagatctggacactcccccccaaaatacaagacaaagcaccttaagaca
aatgagtttagggcactggtcgaattcaagggaatgcagtttgttgggaaacccaagaga
aacaagcaactagcagagggggatgctgctattgaggcactggcctggttaactcacact
tccaactacaatcaaaacgagcatgacgattcccaacctgatgtcactgacaacatgctg
aaacttctcggaaaacgtcgtagatcaaagcgtcactctggttga
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