Populus nigra (Lombardy poplar): 133698021
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Entry
133698021 CDS
T10372
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC2A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133698021
04121 Ubiquitin system [BR:
pnz04121
]
133698021
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133698021
Membrane trafficking [BR:
pnz04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
133698021
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133698021
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF1117
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-rbx1
zf-C3HC4
zf-RING_11
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_3
zf-RING_5
Zn_ribbon_RPAB4
Zn_ribbon_GTF2H2
zf-C3H2C3
FAR1_N
zf-HC5HC2H
Prok-RING_4
CxC4
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
133698021
NCBI-ProteinID:
XP_061976863
LinkDB
All DBs
Position
6:complement(3371137..3372957)
Genome browser
AA seq
403 aa
AA seq
DB search
MSSPTTPSYWCYRCNRFVQVWRQDSVTCPECESGFIEEIENPPHMIQTEASRERHRRLSP
AAGTMYMIGNRSNPHRRNRRGGAAGSGDRSPINPVIVLRGGPGGAAEDVVGDDGGRGGGG
FELYYDDGGGSGLRPLPPSMSEFLLGSGFERLLDQLTQIEMNGGFGRYENQHPPASKSAI
ESMPTVIINESHTFAESHCAVCKEAFELESEAREMPCKHIYHTDCILPWLSIRNSCPVCR
HELPSGDDDGEDGVGSPLPEAGNGQGNNEEEAVGLTIWRLPGGGYAVGRFTGARRGEREL
PVVYTEMDGAFNNGGLPRRISWGSRGGGRRENGGGVNGGRDGGNRGFSFGRVLRHWFACF
GVGRGSSSNSRVTGRNRPSPVFSSSSSMRRRGWGAEINTGRRR
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctccaactacgccgtcgtattggtgctatagatgcaaccgtttcgttcaggtt
tggagacaggactcggtaacttgcccagaatgtgaatccgggttcattgaagaaatcgaa
aaccctccgcacatgattcaaacagaagcatcacgtgaaaggcaccgcagactttctccc
gctgccggaacgatgtacatgatcggtaaccgctcaaacccccatcgccggaaccgtcga
ggtggagccgccgggagcggagaccggtccccgatcaatccagtgatcgtgcttcgtggc
gggcctggaggggcggcggaggacgtagtgggagatgacggtggccgcggtggtggaggg
ttcgagctttattatgatgacggcggcgggtccgggttgaggccgttgccgccgagcatg
tcggaatttttattgggatcagggtttgagagattgttagatcagttaacacagattgaa
atgaatggagggtttggccgctatgagaatcagcacccgccggcgtcaaagtcggcgatt
gaatcgatgcctacggtaattattaacgaatctcatacttttgccgaatcgcattgtgct
gtttgtaaggaggcttttgaattagaatccgaagcacgagagatgccttgtaaacatatc
tatcatactgattgtatacttccttggttatctattcgtaattcttgtccggtttgtcga
catgaattgccttctggtgatgatgacggtgaggatggggttgggagtccgttacctgaa
gcagggaatggacagggaaataacgaggaggaggcagttgggctgacgatatggaggtta
cctggaggagggtatgcggtggggaggtttacaggggcgaggaggggagaaagagagctg
cccgtggtttatacagagatggatggtgcgtttaacaatggtggattgccgaggaggata
tcttgggggtctagagggggtggaaggagggagaatggtggtggggttaatggtggtaga
gacggtggtaatagagggtttagttttgggagagttttgaggcattggtttgcttgtttt
ggcgtgggacggggttcgagttcaaactccagagtcaccgggaggaataggccttctcct
gtttttagcagttcctcttcgatgaggagaaggggttggggcgctgagattaatactgga
aggagacggtga
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