Populus nigra (Lombardy poplar): 133698158
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Entry
133698158 CDS
T10372
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133698158
Spliceosome [BR:
pnz03041
]
Complex C
Other components
Complex C specific factors
133698158
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Other DBs
NCBI-GeneID:
133698158
NCBI-ProteinID:
XP_061976983
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Position
7:complement(18497812..18508948)
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AA seq
703 aa
AA seq
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MSQQFWKPGSEKPRILEDEEGGVVFFGPPLSSAASSSSRFGYASIGSQRQRLPVYKYRTA
ILYLVETHATTIVVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQTVASRVAE
EMDVKLGEEVGYTIRFEDVTNPAATMIKFLTDGVLLREIMNDPLLTKYSVIMVDEAHERS
ISTDILLGLLKKIQRRRPELRLIISSATIEAKSMSDFFQTSSKKHRGQEDHEFVPRKVPA
ILSVEGRGFNVHIHYVVEPVSDYVQASVSTVLSIHEQEPAGDILVFLTGQDDIDAAIRLL
TEEAHASRKISSGLIVLPLYSSLPRADQDLVFSPTPRGKRKVVISTNIAETSLTLEGVVY
VVDSGFSKQQFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFVNEMS
SVGIPEMQRSKLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKL
TSPVGFQAAEIPLDPMISKMILSSNQLGCSDEIITIAAILSIQSIWVSGRGVQKELDEAK
LRFAAAEGDHVTFLNVYKGFLQSGKSSQWCHKNYMNYQAMKKVIEIREQLRRTALRLGIV
LKSCEGDMLAVRKAVTAGFFANASRLEAFSHNGMYKTVRGSQEVYIHPSSVLFRVNPKWV
VYHSLVSTDRQYMRNVMTVDPSWLTEAAPHFFQHQRRPDPIVH
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaacaattctggaaaccaggcagcgagaaaccccgcattctcgaagacgaagaa
ggcggtgtcgttttcttcggcccccctctctcttccgctgcctcctcttcctccaggttt
ggatatgcaagtattgggagtcaaagacagagattgcctgtttacaagtacagaacagca
attctgtacctcgtagagactcacgccactactattgtcgtcggcgagaccggtagcgga
aaaaccacgcaaatccctcagtatcttaaagaggctggttgggctgatggtggacgtgtt
atagcttgcacccagccgagacgactcgcagtccagacggttgcttcaagggtggctgaa
gagatggatgtcaagcttggagaggaagttggttacacaattcgatttgaggatgttacc
aatcctgctgcaactatgataaagtttctaacagatggggtattattgagagaaattatg
aacgatccgcttttgaccaagtatagtgtcatcatggtagatgaggctcatgaaaggtct
atttcaactgatattctactaggtctcctgaaaaagatccagcgacgtcgacctgaacta
cgcctgattatctcatctgctacaatcgaggcaaaatctatgtcagatttcttccagact
agtagcaaaaagcatcgaggacaggaagaccatgagtttgttccaaggaaggttcctgca
attttatctgttgagggcagagggtttaatgtacacatacattatgttgtggagcctgtc
tcagactatgttcaggcttctgtttcaactgtgttgtcaattcacgagcaggaacctgca
ggtgacattcttgtatttctcactggtcaagatgatattgatgctgctattcggctgctt
actgaagaagctcatgccagcagaaagatctcttcaggattgattgttttgcctttgtac
tccagtctcccacgtgcagaccaggatctggtgttttccccaactcctagagggaagagg
aaagtggtgatatcaaccaatatagcagagacatcattgacactggagggcgttgtctat
gttgttgacagtggattctcaaaacagcagttctacaatccgatctcagatattgaaaat
ctagtggtggcccccatatcaaaggcgtctgctagacaaagagctggtagagctggaaga
gttcgacctgggaagtgttacaggttatacacggaagagtactttgtcaatgaaatgtct
tctgttgggatcccggagatgcaaaggtcaaaacttgtttcctgtgtgattcagttaaaa
gccttgggaatagacaatatactaggctttgattggccagcatctccaccacctgaagca
atgattcgagcacttgaagttctttattcactaggtgtccttgatgatgatgctaagctt
acttcacctgttgggtttcaagcagcagagattccattagatccaatgatatcaaaaatg
atactatcttcaaaccagctaggatgttctgatgagatcatcacaattgcagctattctc
tccatccagtctatttgggtttctggtaggggggtgcaaaaggaattagatgaagccaag
ttgagatttgcagctgctgagggtgaccatgttacattcctaaatgtttataaaggtttt
cttcaatctggtaaatcatcacaatggtgtcataagaattatatgaattaccaagctatg
aagaaggtaattgaaattagggaacagctcagaagaacagcactgagattaggcatagtc
ttaaaatcttgtgaaggggacatgctggccgtacggaaagcagttactgctggatttttt
gcaaatgcaagtcgtttagaagcattcagtcataacgggatgtacaagactgttagaggt
tctcaagaagtttatattcatccttcgtctgtgttgttcagagttaatccaaaatgggtt
gtataccactctcttgtctcaacagaccggcaatacatgaggaatgtcatgactgttgat
ccttcttggctaacagaggctgctccgcattttttccagcatcaacgaagaccggatccc
attgttcactaa
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