Populus nigra (Lombardy poplar): 133698170
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Entry
133698170 CDS
T10372
Name
(RefSeq) WD-40 repeat-containing protein MSI2-like
KO
K10752
histone-binding protein RBBP4
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03082
ATP-dependent chromatin remodeling
pnz03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133698170
03083 Polycomb repressive complex
133698170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pnz03036
]
133698170
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
133698170
Histone modification proteins
HAT complexes
HATB complex
133698170
HDAC complexes
Sin3A-HDAC complex
133698170
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
133698170
PRC2.2
133698170
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
133698170
Heterochromatin formation proteins
Other heterochromatin formation proteins
133698170
Chromatin remodeling factors
NuRD complex
133698170
NuRF complex
133698170
NuRF complex (fruit fly)
133698170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
Beta-prop_EIPR1
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_RIG_2nd
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
WD_LRWD1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_RFWD3
MIOS_WD40
DUF6922
Beta-prop_NUP159_NUP214
Beta-prop_SPT8
Beta-prop_RIG_1st
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
133698170
NCBI-ProteinID:
XP_061977001
LinkDB
All DBs
Position
7:4976459..4980961
Genome browser
AA seq
417 aa
AA seq
DB search
MAAAEDDQEAGQDQLDEEFSVWKKNTPVLYDLVISHPLEWPSLTVQWVPLAAPMPHPTDP
SSFSVHKLVLGTHTSDDFPNFLMVADAVMPTSVADAKIDTSCSSADSVIPKVEITQKIRV
DGEVNRARCMPQNPAIVGAKTSGCEVYVFDSTKQAERKQRDGCDPDLRLTGHDKEGYGLS
WSPFKQGYLVSGSHDNRICLWDVSGNAQDKVLGALQVYEAHESVVEDVSWHLKNENLFGS
VGDDCRLVIWDMRTNQTQHSVKAHKKEINYLSFNPYNEWILATASSDATVGLFDMRKLTA
PLHALSSHTEEVFQVEWDPNHETVLASSADDRRLNIWDLNRIGEEQLELDADDGPPELLF
SHGGHKAKISDFSWNKNESWVISSVADDNTLQVWQMAESIYGDDDIPAADEPPLAEK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcggaggatgatcaagaggcgggacaagatcaacttgacgaagaattctct
gtatggaagaagaatacgccagttctctatgatctcgtcatctcccaccctctcgagtgg
ccatctctcactgtccagtgggtgcccctcgctgcaccaatgcctcacccaactgacccc
tcgtctttctctgttcacaagctggttcttggcactcacacttctgatgatttccccaac
tttctcatggttgctgatgctgtgatgcccacttccgtcgctgatgccaagattgacact
agttgcagttctgcggattctgtgattcctaaggtggaaattacacagaagatacgtgtt
gatggagaggtgaacagagcacgatgtatgccacaaaatcctgctattgttggtgcaaag
acaagtggttgtgaggtttatgtgtttgattctaccaaacaagcggagaggaaacaaagg
gatggctgtgatccggatttaaggttaactggtcatgataaagaagggtatggattgtcg
tggagtccatttaaacagggttatcttgtgagtggctcacatgataatagaatatgtttg
tgggatgtgtccggcaatgctcaagataaagtgcttggtgcattgcaagtttatgaggcc
catgaaagtgtggttgaagatgtgtcatggcacttgaagaatgaaaatttgtttggttct
gtgggggatgattgtcgattagtgatctgggacatgcgcacaaatcaaacccaacattct
gttaaagctcacaagaaagagattaactatctatcattcaatccatacaatgaatggatt
ctggccacagcttcttcagatgcaactgttggtctgtttgatatgcggaagctgactgca
ccactgcatgctttaagtagccacacagaagaggtattccaagtagaatgggatcctaat
catgaaacagtgttagcatcctccgctgatgacagaagattgaacatttgggacctgaac
aggatcggcgaggagcagttagagttagatgctgatgacggcccaccagaacttcttttc
tctcacggaggtcacaaggcaaagatatcagatttttcatggaataaaaatgaatcatgg
gtcatctcaagtgtggctgatgacaatacccttcaagtgtggcaaatggctgaaagtatt
tatggtgacgacgacataccggctgctgatgagcctcctctagctgaaaagtga
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