Populus nigra (Lombardy poplar): 133698295
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Entry
133698295 CDS
T10372
Name
(RefSeq) probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz00040
Pentose and glucuronate interconversions
pnz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
133698295
Enzymes [BR:
pnz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
133698295
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Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
133698295
NCBI-ProteinID:
XP_061977153
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Position
7:complement(21966604..21968382)
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AA seq
392 aa
AA seq
DB search
MASLAHVLLLSCLATFFASTLQGDSLNYKPKSLSGYLPRNYKKVLNTIDSCWRTESDWAT
NRRALADCAVGFGQAAIGGKYGKTYVVTTPDDDPINPKPGTLRYGAIRTEPLWIIFARDM
VITLENELMINSYKTIDGRGANVEITGGPCLKIEYVSHVIIHGISIHDCKPGKKGLVRSS
PTHVGERRGADGDAIAISASSNIWIDHCYLARCMDGLIDVIHATTAVTISNNYFTEHDKV
MLLGHNDKYTEDQVMKVTVVFNHFGPKLNQRMPRVRFGYAHVANNRYDKWQMYAIGGSAG
STIFSEGNYFIAPDISYAKEVTKREVYGGWKNWKWRSSKDVFMNDAYFVQSGYGRCAPRY
SKAQSFTVSPGAMAPALTSDAGPLSCVVGEAC
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgctagctcacgtcctgttgctttcatgtcttgctacattctttgcttcaacc
ttgcagggtgattcacttaactacaagcctaaatccttatcaggctatcttccaagaaat
tataagaaagtcctgaataccatagactcatgttggcggacggagtccgattgggctacc
aatcgtcgtgctttggctgattgtgctgtgggatttggccaggctgcaatcggagggaaa
tatgggaaaacatacgttgtcactactccggatgatgatccgataaatccgaaaccaggc
acgcttcggtatggtgctatccggactgagcctctttggatcatttttgccagagacatg
gttattacactcgaaaatgagcttatgataaatagttacaagactatagatgggagaggt
gctaatgtcgagattacaggcgggccgtgcctaaaaattgaatatgttagccatgttatc
atacatgggattagcattcatgactgtaagccaggtaaaaaggggcttgttaggagtagt
ccgacgcacgttggtgaacgccgaggtgctgacggagatgccattgccatttctgcatcg
tctaatatttggattgaccattgctatcttgctcgctgcatggatggcctaattgatgtg
attcatgctaccactgctgtcactatctctaacaactatttcaccgagcatgataaggtg
atgctgctaggacataacgataaatacactgaggatcaagttatgaaagtaacagttgtc
ttcaatcattttggccctaaactcaatcaaagaatgccaagagtaaggtttggttatgcc
cacgttgccaacaacagatatgataaatggcaaatgtatgccattggcggcagtgctggt
tcaaccatattcagtgaagggaactacttcattgctcctgacatttcctatgccaaagag
gttaccaagagagaggtttatggtggttggaagaattggaagtggaggtcatccaaggat
gtatttatgaacgatgcttattttgtccaatctggatatggaaggtgtgcaccacgttat
tccaaagctcagtccttcacagtttctccaggagctatggctcctgctttgacatctgat
gcaggccctttaagctgtgttgttggtgaagcatgttga
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