Populus nigra (Lombardy poplar): 133698421
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Entry
133698421 CDS
T10372
Name
(RefSeq) protein CHROMATIN REMODELING 35-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133698421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133698421
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
133698421
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_16
Motif
Other DBs
NCBI-GeneID:
133698421
NCBI-ProteinID:
XP_061977315
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Position
7:complement(6166859..6172921)
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AA seq
1095 aa
AA seq
DB search
MEGTLNILPLKRAGSNESHVKGNKRMKETKEKVTDYAKPFAIRGLLERLDSGRYGSVTDD
IRSLFYRRAQLIHPCLAMHPTLSNEPRGRGMSFGEEKCNVIDLDDDEIEGGGDSVGNVAV
GRTPVVVIDSDDDESNENRMAGHFQGIVLPKLEGQFSTDVMVSDNVGRRIQGEVASLTGE
PDSKKDKGVYVGVENDEVDTEIKDDSLQVSDNVGRRIQGEVASLTGEPDSKKDKGVYVGV
EDDEVDAGIKDDGLQVSDNVGRRIQGEVASLSGEPDSKKDKGVYVGVEDDEVDAEIKDDG
LQVSDNVGRRIQGEVASLTGEPESKKDNGVYVVVEDDEVDAEIKDDGLQVSDNVGRRIQG
EVASLAGEPDSKKDKGVYVGVEDDEVDTEIKDDGLQVSDNVGRRIQGEVASLTGEPDSKK
DKGVYVGVEDDEVDTEIKDDGLGDIWKEMSFALECSKDVVENSPSDENMEEDEDYCDHSF
VLKDDIGYVCRICGVIERAIDTIIEIQFNKVKRNTRTYISESRNAKDRDSNGTVGADLFE
EDLMVTDIPAHPRHMKQMKPHQVEGFNFLRNNLVADNPGGCILAHAPGSGKTFMIISFMQ
SFLAKYPHAKPLVVLPKGILPTWKREFQIWQIEDIPLYDFYSVKADSRQQQLEVLKQWVE
QKSILFLGYKQFSSIVCDDGKNQVSVTCQEILLRRPSILILDEGHTPRNENTDVLQSLAK
VQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFLRMDTPRAIVKRILSKVNIPGARKQFKA
GVDAAFYDLVEQTIQKDQDFKRKVTVIRDLREMTSKVLHYYKGDFLDELPGLVDFTLMLN
LSSRQKHEVKKLKKLAMKFKRSSVGSAVYLHPKLNSFSKNSAITDDMMDNLLETVDVRDG
VKAKFFLYILSLCESAGEKLLVFSQYLTPLKFLERLVMKVKGWILGKEIFLISGESSSDH
RECSMERFNNSTDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQ
TKKVYAYRLVAADSPEEEDHTTCFRKEAIAKMWFEWNEYCGYQDFEVGTVELDDSGDRFL
ESPLAREDVRVLYKR
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtacactgaacattttgcctctaaaacgcgcaggttcaaatgagtcgcatgta
aagggaaataaaaggatgaaagagacgaaggaaaaagtaactgattacgccaagccattt
gcaattcgtggtttactggagcggttagatagtgggagatatggaagtgttacggacgat
atccgatcacttttttaccggagagctcaattgatacatccgtgtttggctatgcatcct
acgctgtcgaatgagccacgtggtcgagggatgagtttcggtgaggaaaagtgtaatgtg
attgatttggatgatgatgagattgagggtggtggtgattctgttggaaatgtcgctgtg
gggagaacgccggttgtggttattgactcggacgatgatgagagtaatgagaataggatg
gctgggcattttcaggggattgttttgcctaagctcgaggggcaattttccactgacgtt
atggttagtgacaatgttggtagaagaattcaaggagaagtagcgagccttactggtgaa
cctgactccaagaaagataaaggtgtttatgttggtgtagagaacgatgaagttgacacg
gagatcaaagatgatagtcttcaggttagtgacaatgttggtagaagaattcaaggagaa
gtagcgagccttaccggtgaacctgactccaagaaagataaaggtgtttatgttggtgta
gaggacgatgaagttgacgcagggatcaaagatgatggtcttcaggttagtgacaatgtt
ggtagaagaattcaaggagaagtagcgagcctttctggtgaacctgactccaagaaagat
aaaggtgtttatgttggtgtagaggatgatgaagttgacgcggagatcaaagatgatggt
cttcaggttagtgacaatgttggtagaagaattcaaggagaagtagcgagccttactggt
gaacctgaatccaagaaagataacggtgtttatgttgttgtagaggacgatgaagttgac
gcggagatcaaagatgatggtcttcaggttagtgacaatgttggtagaagaattcaagga
gaagtagcaagccttgctggtgaacctgactccaagaaagataaaggtgtttatgttggt
gtagaggacgatgaagttgacacggagatcaaagatgatggtcttcaggttagtgacaat
gttggtagaagaattcaaggagaagtagcgagccttactggtgaacctgactccaagaaa
gataaaggtgtttatgttggtgtagaggacgatgaagttgacacggagatcaaagatgat
ggtctaggagatatctggaaagaaatgtcatttgcattggaatgttccaaggatgttgtt
gaaaattctccatctgatgaaaacatggaagaagatgaagattactgtgatcactctttt
gtcttgaaggatgatattggttatgtttgtcgcatatgtggggttattgagagagcaatt
gatactataattgaaatccagtttaataaggtcaaaaggaatacaaggacttacatctct
gaatcccggaatgccaaggacagagattcaaatgggacggttggagctgacttgtttgaa
gaagatttgatggtaactgacatccctgctcatccaaggcacatgaagcaaatgaaacct
catcaagtggagggtttcaattttcttcgcaataatttggtggcagataatccagggggg
tgcatcctggctcatgctccgggatctggtaagacatttatgataatcagttttatgcaa
agtttcctagccaaatatccacatgcaaaaccgctagtggtgcttccaaaaggaatatta
cctacatggaaaagggagtttcagatatggcaaatcgaggatattccactgtatgatttc
tactctgttaaagcagatagtaggcagcaacaattggaggtcttgaaacagtgggtggag
cagaagagtatacttttcttagggtacaaacagttctcctctattgtatgtgatgatggg
aagaaccaagtgtcagttacttgccaggagatattgctaagaagaccttcaattctaatt
ttggatgaaggccatactccgaggaatgagaatacagacgtgttacaatctctagccaaa
gtgcagacacctcgtaaagttgtgctgtctggaaccctctaccaaaatcatgtcaaggag
gtgttcaatgtattgaatctagttcgtccgaagttcttgaggatggataccccccgagct
attgtcaagcgcatcttgagtaaagtaaacattccaggtgcaaggaagcaattcaaagca
ggtgtagatgcagctttctatgacttggtagagcaaaccatacagaaagaccaagatttc
aaaaggaaggtgactgttatacgagatctgcgtgagatgactagcaaggttcttcattat
tataaaggagatttcttggatgagcttccagggctggttgatttcactttgatgctgaac
ctcagttccagacagaagcacgaggtgaaaaagttgaagaagttggcaatgaagttcaag
agaagttctgttgggagtgctgtttatctacacccaaagttgaactccttctccaagaac
tctgccataactgatgatatgatggataacttgctagagacagtagatgtgagagatgga
gtcaaggcgaaattctttctctatatattaagcttatgcgagtcagctggggagaagctc
ctggttttcagccagtacctcacaccgttgaagtttttagaaagacttgtgatgaaagta
aagggctggattttaggaaaagaaatctttttgatctctggtgagtcaagttctgatcat
cgggagtgttccatggagcgtttcaacaactccacggatgctaaagtattctttgggtcc
attaaggcatgtggagaagggatatcactggtgggagcatctcggataattatcttagat
gttcaccttaatccttcagtaactcgccaggcgataggacgtgcattccgacctgggcaa
acaaagaaagtgtatgcatataggttggtcgctgctgattcacctgaagaggaagatcat
accacttgcttcaggaaggaagcaatcgcaaaaatgtggtttgaatggaatgaatactgt
ggttaccaggattttgaggtggggactgttgagttggatgacagtggagatcgcttcttg
gaaagtccgctggcgagggaagatgtaagggttttgtataaaaggtag
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