Populus nigra (Lombardy poplar): 133698496
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Entry
133698496 CDS
T10372
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133698496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133698496
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133698496
mRNA degradation factors
5'-3' decay
Decapping complex
133698496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_WDR75_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
PEP5_VPS11_N
Beta-prop_HPS5
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
DUF7717
DUF4364
DUF445
Motif
Other DBs
NCBI-GeneID:
133698496
NCBI-ProteinID:
XP_061977460
LinkDB
All DBs
Position
1:complement(390262..398186)
Genome browser
AA seq
1385 aa
AA seq
DB search
MASPNPQHQQQQQQPQPQPPPFDMHKFFMPTSTPPPPQNPSSSPSPPPPNLIMIPPPQQI
PSSYPPSTGTHHFPHYPNFPFPFPPQQQQFQPPYPLQQNPNPSNPPPLANPQRSLSYPTP
PLTPNQQLQDRSGAEIMALLRTPQNQEPPPIPPPAAPAQDFSGAVNNSNNIFSGPIRMPS
STSSKMPKGRRVAGENVVYDVDVRLQGEAQPQLEVTPITKYFSDPQLCLGRQIAVNRTYI
CYGLKQGNIRILNINTALRSLFRTHSQRVTDMAFFAEDVHLLASAGIDGRINVWKISEGP
DVEDKPQITAQTIIAVQIVGEGEIKNPRVCWHCYKQEILVVGVGKRVLRIDTNKVGKGEV
YSSEAPLQCTVDKLIDGIQFVGKHDGEVTDLSMCQWMTTRLVSASMDGTIKIWEDHKASP
LVVLRPHDSQPVYSATFMTATDRPDHIILVTAGPQNREMKIWASASEEGWLLPNDSDLLN
CTQTLELKSSAEPRAEEAFFNQVVALSQMGLILLANAKRSAIYAVHLDYGPNPASTSMDY
ISEFTVTMPILSLTGTSDVVHGQSVAQVYCVQTQAIQQYTLELCQCLPPLMENVGSERSD
SSVLHGVPNADGYAALESHGRKYSDVLMSSTSVDVTTPQQDVPASNMDPRTIASNMSSST
SDADIVCVPSPPLPLRPRLSRGLAEFAVGGMFEPSPASSNQGFNQPAIDYSVDQQMDTIC
SNLSDVPSLDGDSRNDEKKIVQDNSTTLNPPVTFKHPTHLITPSEILMGASSSEINNVNE
GKSEVDSNVQDVVVNNDVVNAEVEVKTVGETIATRDDGFSLRGESKRPVFENKEKIFCSQ
ASDLGVEMTRECCALQPDKNIEESGQVDGVGISESLAPPSHAGGDEVHDSTKDISGKVSE
STVSTVVPLSTTPSTKGKKQKGKNSQASGSSSQSPPAFNSTDSLNEPVGASNLLSVEGAF
PRFLAMQEAINQLVITQKEMNKQMSNMVAIPISKECRRLETTLGRNIEKAIKANTDALWA
RFQEENAKNEKLLRDRTQQITSLILNFINKDLAAMLEKALKKELASVGQGVVRTISPVIE
KTVSSVIVESFQRGVGDKAVNQLEKSVNSKLEATVARQIQAQFQTSGKQALQDSLKAGLE
ASVIPAFEMSCKAMFDQVDAAFRKGMVEHTAATQQHFESAHSSLALTLRDSINSASSLTK
TLSTELADSQRQLLAIAANSGATNSLATQPSNGPLASFHEKVETPLDPTKELKRLISEQQ
YEAAFTIVLQRSDVAMVSWLCCQVDLQGIMAMSPPPLSQGVLLALLQQLACDISKETPRK
LEWMTVVAAAIQPTDQMIAYYARPTVEQVCEILNHLRSSSGVTGAEITSIRILMHVVNYL
LMTCK
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcatccccaaatcctcaacatcaacagcaacagcaacaaccgcaaccacaacctcct
ccttttgacatgcacaagttcttcatgcccacatccacaccaccaccacctcaaaaccct
tcttcctccccttctcctcctcctcccaatctcatcatgattcctccaccacaacaaatc
ccttcttcttaccctccatccactgggacccaccacttccctcactaccccaacttcccg
tttcccttcccaccccaacaacaacaatttcaacctccttaccctctccaacaaaaccct
aaccctagcaacccacctcctcttgctaacccccaacgttccctctcttatcccacaccc
cctctcaccccaaaccaacaactccaagaccgttctggtgccgaaatcatggcactcctc
cgcacccctcaaaatcaagaacccccaccaatcccaccgccggccgcgcctgcgcaagat
ttttctggagctgttaataatagtaataatattttttcggggcctattaggatgcctagc
agtactagtagcaagatgcccaagggaaggagggtagctggtgaaaatgtagtgtatgat
gtggatgttagattgcaaggagaggcgcaaccccagcttgaagttacgcctataactaag
tacttttctgatcctcagctgtgtttaggaaggcaaattgctgttaataggacttatatt
tgttatgggttgaagcaagggaatattaggattcttaatattaataccgcgctgaggtct
ttgtttcggacacattctcagagggtcactgacatggctttttttgccgaggatgttcat
cttttggctagtgctggcatagatggacggattaatgtctggaagatctctgaaggtccg
gatgtggaagataagccacagattacagcacagactattattgctgtccaaatagttggt
gagggggaaattaaaaacccaagggtttgttggcattgctataaacaggaaattttggtt
gttggagttggtaaacgagttctgagaattgacactaataaagttggaaagggcgaagtc
tattcatccgaggcacctcttcaatgtactgttgacaagctgattgatgggatccaattc
gttggtaaacatgatggagaagtcactgatttgtcaatgtgccaatggatgaccacccgt
ttggtatctgcttctatggatggcacgataaagatttgggaggatcacaaggcatcgccc
cttgtggttttgagaccgcacgatagccaacctgtttattcagccacgttcatgactgct
actgaccggccagatcacatcatacttgtcacagcagggcctcagaacagggaaatgaag
atttgggcctcagctagtgaagaaggctggctcctgcctaatgattctgatttgttgaat
tgcacccagacattagagctgaagagttcagctgaacctcgagctgaggaggcattcttc
aatcaagtagtagcgttgtctcaaatgggccttattttacttgcaaatgcaaagaggagt
gctatatatgctgtgcatttagattacggtcctaatccagcatcaactagtatggactac
atatcagagtttactgtcactatgcctattttgagtttaactgggacaagtgacgttgtg
catggccaatctgttgctcaagtttattgtgtacagacacaggcaattcaacagtatact
ttggaattatgtcagtgcctgccacctttgatggaaaatgtgggttcagagaggtcagat
tccagtgttttacatggtgtgcctaatgctgatggatatgctgccctggagtcacatgga
cgtaaatattctgatgttcttatgagctccacatcagttgatgtgactactccgcaacaa
gatgttcctgcttcaaatatggaccccagaactattgcttcaaatatgtcctcatcaact
agtgatgctgatatagtttgtgttccatcacctcctcttcctttgagacctagattatct
agaggtcttgctgagtttgcagttgggggaatgtttgagccaagtcctgcatccagcaac
caaggctttaatcaaccagctatcgattattcagttgaccagcaaatggacacaatttgt
tcaaatttgtctgatgtgccttccttggatggtgactcaaggaatgatgagaagaaaatt
gtacaagataattctaccactcttaatcctcctgttacatttaaacacccaactcatcta
ataaccccttctgagattttaatgggtgcttcatcctctgaaataaacaatgttaatgag
ggcaagagcgaggttgactcaaatgttcaagatgtggttgtaaataatgatgttgtcaat
gctgaggtggaagttaaaacagttggtgaaacaatagccactcgagatgacggatttagt
cttcgaggggaatccaaaaggcctgtttttgaaaacaaggaaaaaatcttttgctcccag
gcatcagatcttggtgttgagatgactagagagtgttgtgcattacagccagacaaaaat
attgaggaaagtggacaagttgatggtgttggcattagcgagtctcttgccccaccttct
catgcaggtggggatgaagtccacgactcaacaaaagatatatctgggaaagtttctgag
tccactgtgtcgacagttgttccactgtcaacaactccaagtacaaaagggaagaagcag
aaggggaaaaattctcaagcatcaggttcatcttctcaatctccacctgcctttaattca
acagattctttgaacgaacctgtcggggcttcaaatctcctctccgtggagggtgccttt
cctcggtttttggctatgcaggaggcaattaatcagctagtgatcacacaaaaggaaatg
aataagcagatgtcaaatatggttgcaattcctatttctaaagaatgtagaagactagag
accactttggggcggaacattgagaaagccatcaaagccaatactgatgcattgtgggct
cgatttcaagaagagaatgcaaagaatgagaagttattgcgagatcgcacacagcagata
acaagtttgatcttgaattttatcaataaggacttggcagccatgttagagaaagcactg
aagaaggaattggcttcagttggacaaggtgtagttcgcacaatatctccagtcatcgag
aaaacagtatcttctgttattgtcgagtctttccagagaggagttggtgacaaggcagtg
aatcaactggagaaatcagttaactcaaaacttgaggctactgttgctaggcaaatccaa
gctcagtttcaaacttctggcaagcaagctctccaggattccttgaaggctggtctggaa
gcgtcagtaatccccgcctttgagatgtcttgcaaagctatgtttgatcaagtagatgct
gcctttcggaaagggatggttgagcatacagctgcaacccagcagcattttgaatctgca
cattcttcattggcactcactctaagggattccatcaactcagcatcatcattgacgaaa
accttgagtacagagttggctgatagtcaaaggcagctgttagctattgcagcaaactca
ggtgcaacaaattcgttggctacacaacctagcaatggacctttggctagcttccatgag
aaggttgaaacacctttggatccaacaaaagagctaaaacgattaatatctgaacaacaa
tatgaggcggcattcactattgtgctacaaagaagtgatgtggccatggtatcctggctg
tgttgtcaggttgatctgcagggtatcatggctatgtctcctcctccactaagccaagga
gtattactcgctcttctacagcagctagcctgtgatataagcaaagagactcctcgaaag
cttgagtggatgacagtggtggcggctgccatacagccaacagaccaaatgattgcttac
tatgcacggcctactgtcgagcaagtctgtgagattttgaaccatctaaggagctcatct
ggcgttactggcgctgagatcacaagcatccgtattctcatgcatgtcgttaattacttg
ctgatgacctgtaaatga
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integrated database retrieval system
