Populus nigra (Lombardy poplar): 133698711
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Entry
133698711 CDS
T10372
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04120
Ubiquitin mediated proteolysis
pnz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133698711
04120 Ubiquitin mediated proteolysis
133698711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pnz04121
]
133698711
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133698711
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
U-box type E3
133698711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
133698711
NCBI-ProteinID:
XP_061977724
LinkDB
All DBs
Position
7:complement(11676764..11685029)
Genome browser
AA seq
1020 aa
AA seq
DB search
MATTSNKPQRSLQEIEDIILRRILSVSLADSSDPRIFYLEMTAAEILSEGKDLKLTRDLI
ERVLIDRLSVQSPNAEPPFNYLLGCYRRAVDELKKIANMKDKNVKSELELSIKQVKKLSV
SYCRIHLGNPDLFGGDSSVVRKSGNSNVSPVLPLIFAMVDGFNSGGIQPPPPGFLEEFFR
EGDFDSLDPILKGLYEDLRGIVLKVSVLGNFQQPLRALLFLVSFNVGAKSLVSHKWWIPT
GAYVNGRVIEMTSILGPFFHISAWPDNTIFKSEPDVGQQCFSDATNRRPADLLSSFTTIK
TLVNNLYDGLAEVLLALLKNGDTRESVLQYLAEVINRNATRAHIQVDPLSCASSGMFINL
SAVMLKLSEPFLDANLSKRNKIDPNYVFHNNRLDLRGLTALLASSEEITQWLNTPGKTDI
SAQSNDVENRLVQSQEATSSGRSGEKSKYSFICECFFMTARVLNLGLLKALSDFKHLVQE
ISRCEDMLSTFKALQEQTPSQQLQQDIDRLEKDIELYSQEKLCYEAQILRDGALIQRALS
FYRLMLVWLVSLVGGFKMPLPSTCPKEFASMPEHFVEDAMELIIFASRIPKALDGVLLDD
FMNFIIMFMASPTYIRNPYLRAKMVEVLNCWMPRRSGSSATASLFEGHQLSLEYLVRNLL
KLYVDIELTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRDIWRKIAKEEEKGVYLNFLNF
LINDSIYLLDESLSKILELKGLEAEMSNTTEWERRPAQERQERTRLFHSQENIIRIDMKL
ANEDLSMLAFTSKQITAPFLLPEMVDRVANMLNYFLLQLVGPQRKSLTLKDPEKYEFRPK
QLLEQIVCIYVHLARGDNENIFPAAISKDGRSYNEQLFTAAVDVLRRIGEDGRVIQEFIE
LGAKARVAASEAMDAEAALGEIPDEFLDPIQCTLMKDPVILPSSRITVDRPVIQRHLLSD
NTDPFNRSHLTVDMLIPNTELKARIKEFVRSQELKRHGEDFSLQRAKDTIQTTTEEMLID
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgacctcaaataaacctcagagatctctccaagaaatcgaggacattatcctc
cgcagaatcctctcagtctccctcgccgactcctctgatcctcgaattttctacttagaa
atgacagcagctgagattctcagtgaaggaaaagacttgaaactcactcgcgacttaatc
gaacgtgtcttgatcgatcgattgtctgttcaaagccctaacgcggaacctcctttcaat
tacctcttaggctgctaccgtcgtgctgttgatgagttgaagaaaatcgccaatatgaag
gacaaaaatgtgaaatcagagctggaattgtcgatcaagcaagtcaagaagttgtcggtt
tcgtattgcaggattcatttagggaatcctgacttgtttgggggtgattcgagtgttgtt
agaaagagcgggaattccaatgtttctccggttctgcccttgatttttgcgatggttgat
gggtttaatagtggcggaattcagccaccgccgccggggtttttagaggagttttttaga
gaaggggattttgatagcttggatccgattttgaagggtttatatgaggatttgagggga
attgttttgaaggtttctgttttagggaattttcaacaaccattaagggctttattgttt
ttggttagttttaatgtcggtgctaaatcacttgttagtcataagtggtggattccgaca
ggggcatatgtaaatgggagagttattgaaatgacaagtattttgggtcctttttttcat
attagtgcatggcctgataatactatttttaagagcgagccggatgttgggcagcagtgt
ttctctgatgcaacaaatcgtcgacctgctgatttgttatcttcatttactacaattaag
actcttgtgaataatttatatgatggattagcagaagtgcttcttgctcttcttaaaaat
ggtgatactcgtgagagcgtgcttcagtatcttgctgaggtgatcaatagaaatgcgaca
agagctcacatacaggtcgatcctttatcttgtgcaagttcgggcatgtttatcaatcta
agtgctgtcatgcttaagctatctgaaccttttttagatgcaaatttgtcaaaaaggaac
aaaattgatccaaattacgtgtttcacaataaccgtttggatctaagagggttgacagct
ctgcttgcatcatcagaagaaatcactcaatggcttaatactcctggaaaaactgatatc
tctgcacaatctaatgatgttgaaaatcgcttggtacaatctcaagaagccaccagttct
ggtagaagtggtgaaaagtctaaatactcatttatttgtgagtgcttctttatgactgca
agggtgctcaacttgggtctgttaaaagcattgtctgactttaagcatctagttcaggaa
atttctagatgcgaagatatgctctccacttttaaagccttgcaggagcagacaccgtct
cagcagctgcagcaggatattgaccgtcttgagaaagatatagagttatattcacaggaa
aagctttgttatgaagctcaaatattaagggatggagcacttattcagcgtgcactttct
ttctaccggttgatgttggtttggttggttagcctggttggtggatttaaaatgcctctt
ccatcaacttgcccaaaggaatttgcctcaatgccggagcattttgtggaagatgccatg
gaactaattatatttgcctctcggattccaaaagctttggatggagtcttactggatgat
tttatgaacttcattatcatgttcatggcaagtcctacatatattagaaacccttattta
agagcaaagatggttgaagtattgaactgctggatgccacggagaagtggttcgtctgct
acagcttctctatttgaagggcaccaattgtcacttgagtatcttgtgaggaacctcttg
aagctttatgttgacattgagctcacaggctctcacacacagttctatgacaagttcaac
atacggcataatattgccgaacttcttgaatatctatggcaggtccctagtcatcgtgat
atttggagaaagattgctaaggaagaggaaaagggtgtctatctgaatttcttgaacttc
ctgatcaacgatagcatctatcttcttgatgaaagtctgagcaaaattcttgaactcaaa
gggttagaagctgagatgtccaacaccacagagtgggagcgaagaccagctcaagagagg
caggagagaacccgccttttccattcccaagagaatatcatccgcattgacatgaagttg
gcaaatgaagatttgagcatgctggcatttacatcaaaacagattacagcacctttcctt
ctccctgagatggttgacagagtggccaacatgctcaattacttcttgttacaacttgtg
ggtccccaaaggaaatcccttaccctgaaagaccctgaaaagtatgaatttcgcccaaaa
cagttgcttgagcagattgtctgtatatatgttcatttggcgaggggtgataatgaaaac
atattcccagctgccatctcgaaggatgggcggtcatacaatgagcagttatttactgct
gctgttgatgtccttcggagaattggtgaagatgggagggtcatccaggaatttattgaa
cttggtgcaaaagccagggttgcagcttctgaggcaatggatgctgaagctgcccttgga
gagataccagatgaattccttgatccaattcagtgcactttgatgaaggatccggtgatc
ttaccttcttcaagaatcacagttgataggcctgtcattcaaaggcatcttctgagtgac
aatactgaccccttcaaccgatcccatcttactgtggacatgttgattccaaacactgag
ttgaaggcaagaataaaggagttcgtcaggtcccaagaattaaagaggcacggagaagac
ttcagcttgcagagggccaaagatacaatccaaaccacaactgaagaaatgttgattgat
tag
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integrated database retrieval system
