KEGG   Populus nigra (Lombardy poplar): 133699248
Entry
133699248         CDS       T10372                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    133699248
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pnz04121]
    133699248
   03036 Chromosome and associated proteins [BR:pnz03036]
    133699248
Enzymes [BR:pnz01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     133699248
Ubiquitin system [BR:pnz04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    133699248
Chromosome and associated proteins [BR:pnz03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     133699248
    Noncanonical PRC1 (PRC1.1)
     133699248
    Noncanonical PRC1 (PRC1.3/1.5)
     133699248
    Noncanonical PRC1 (PRC1.6)
     133699248
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 Androgen_recep zf-UDP zf-RING_4 zf-rbx1 zf-RING_6 zf-C3HC4_5 zf-RING_10 zf-RING_11 ZNF512_C2HC
Other DBs
NCBI-GeneID: 133699248
NCBI-ProteinID: XP_061978411
LinkDB
Position
7:complement(19005161..19009864)
AA seq 467 aa
MPAQKRSHETLQKEDDDALIQQQQDHTNNNNNNNHEQKQQPQDDIDDDGGGGGVDEQSDR
SQSSSSINEDVKEEYVVVKLSEIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRL
GNNECPACRTHCASRRSLRDDPNYDALISALYPDIDKYEEEELAFQEDEKARNKQIQATI
AQTFHRQAEALSRKKTTAKVTAAAFARRTPSRFRDAHSRGRRNYRMAGFQGSDDNEDANG
DGGKDSSSADEHSAEVKPKRCKKWAGARSAAVNADGGGDENDSEVNKESVGGSSGLVGSS
ERLAWGKNGMRSHTRYGSANGSNVKNARSSRISKLADYLRNLEGNDNEFDINLMLVSFDE
QRVPSLQRPYLCCRPTLSINKLCQYVAFQTSLQANEVEIYLVREMNSKVDFSISRSTPIS
KPGIIDPCKDKLQVLEEQETLGRLKTNNFIHGHLLLAYRKKVLKSEW
NT seq 1404 nt   +upstreamnt  +downstreamnt
atgccagcccagaagcgttcccatgagaccctccaaaaggaagatgatgatgctcttatt
cagcagcaacaagaccacactaacaacaacaacaacaataaccatgaacaaaagcaacag
cctcaagacgatattgatgatgatggtggtggtggtggtgttgatgagcaatccgatcga
agccagtcttcttcgagtattaacgaagacgtgaaagaagaatatgttgtagtgaagttg
tctgagatacgcaaggaagtacaatgtccaatctgtctaggtattatccgcaaaacaaga
acagtgatggaatgtctgcaccgtttctgcagggaatgcattgacaaatctatgcggctc
gggaacaatgagtgccctgcttgccgcacacattgtgccagtcgtaggtctttgagagat
gacccaaattatgatgcattaatttcagccttgtatccagatattgacaaatatgaggaa
gaggaattggctttccaagaagatgagaaggctcgcaataagcagatccaggctaccatc
gcccagacttttcatcgacaggctgaagctctgagtagaaaaaaaacaacagctaaagtg
acagcagcagcatttgcaaggagaacaccaagtcgttttcgagatgcccactctagggga
agaagaaattatcgaatggctggatttcaaggatctgatgacaatgaagatgcaaatggt
gatggaggaaaagattcatcatctgctgacgagcacagtgcagaagtcaaaccaaaaagg
tgcaagaaatgggcaggtgctcgttcagctgctgttaatgcagatggaggtggtgatgaa
aatgattcagaagtgaataaagaatctgtggggggatcttctgggctagttggctcctca
gaaaggcttgcctggggaaaaaatggcatgcggagtcacacccggtatggcagtgcaaac
ggcagcaatgtaaaaaatgctcgaagcagtcgcatctctaagttagcagattatctacgg
aacttggagggaaatgataatgagtttgatatcaacctcatgcttgtttcttttgatgag
caaagagtacccagtttgcagcgcccatacctttgctgcaggccaactttgtctattaat
aaactgtgtcagtatgttgctttccaaacctctttgcaagccaatgaagtggagatatac
ttggtccgagagatgaattctaaggtcgacttttcaatctccaggagtactccaatttct
aaacctggtataattgatccatgcaaagataaattgcaagttttagaagaacaagaaact
ttgggaagacttaaaacaaacaatttcatccacgggcacctgctcctggcatatcggaaa
aaggtgttaaagtccgaatggtag

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